BAC Information

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BAC

Clone NameMSMg01-073M12
Chromosome7 (Build37)
Map Location 143,443,108 - 143,443,302
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043254, Foxi2, Clrn3, Ptpre, Mki67, LOC668764
Downstream geneLOC546009, EG621677, EG668771, Mgmt, EG621804, Ebf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073M12.T7 (MSMg01no073_m12.b1)MSMg01-073M12.TJ (MSMg01no073_m12.g1)
ACCAG296996AG296997
length715721
length of high quality
(start - end)
55 (273 - 327)196 (128 - 323)
definitionCHROMAT_FILE: MSMg01no073_m12.b1 PHD_FILE: MSMg01no073_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:57 2005CHROMAT_FILE: MSMg01no073_m12.g1 PHD_FILE: MSMg01no073_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTAAACCAGCCCGGAGGAGTCTATATTTGTAAATCAATTTTAAAA
TGCATATGTTTTGTTCCTAAATATGAACAAACTACTTAGAAGCTGAAATA
TCATAAACAAATTCCAAATAGTCATAGACATTCACTGCCTAGTTGGGTAT
GGCCATAGTATAAGTTCACTTTAAATTCAAGGAAAATATGCTGAAATAAG
TATGTGGCTGGTTGTGGCACGTTTTGCCTTCATTTAAACCTGCCATCCTT
CTCTGCTTTGCCTTCATCATCCCTTAAAACCTTTACTGAAACTAGGCTTA
AAAAATAAAAATTGTTCACAGAACAGTTTTTCACATACGGTCACGCTGTT
CCTCTGACATTTGGGGTATACTTTTTGGAAGAGAGGAGACTCAGAGGCCA
CCCACACTGAGCCTAGGCAGGTTGTCTCTATCCCACTCTCTTCCCTCTTT
CCCTTCTGGAGGCATGTCAGCCTAAGTTGCCCATTTCTCTTCCAGTAATG
GAGCCACCTACCTTCTGCTCTGAGCTGCATATTGTGGTTTGTATTACCAT
TTTGAATATTTCCCCATGATCTCCTGTTCATTTCTACTTCAAGCTCTGAA
AGGTTTGACTTGTCTCCTTCTAGTATCTTCCCTTAGTCTGTAAACCGTTT
GCCGATTTTCCCATC
TCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGATAACAGGAAAGGGGGAACCCTGTT
GGCGTTTAGAGAGGAGATAGCCAAGGGCTGCGTCATCATCAGGAGGCTCA
GACTTCTTCCCTCGGACATCAGAACTACAGTTTGTTCTTCTCAGAATCTC
TGCCATCTTTCTGGATCTAGTTCTGGGGTCTCACTTTCCTTTCCCTCTCA
TTACAAGCAAGTGCCATCCTGCATCCTGGCACTTCCTGTCTCAGCGCTGA
TAGATCAGGCACAGAGCAGCTGTTCCTGTCACTGTCAGGGCATATAGTGT
TTTAACAATGGTGCCTGCCTGCCGTCACTCTCACGGAGCCTCTGCTTCCA
GGTCGCTTAGGGAAGATCTATAGATTGCCATGTCCCTTTCCAGGTCCTAG
GGTCCCTTTGTCGAACTTCTTCTAGGTCCAATGGCTTGTCTGTACAGCAC
AGCACGTTGCGTGCCTACAATGTCATTATCCCCCTATTTATCTCCCTTAA
TCTGCACCTCGAATTTCGCTATCCTTATCAGATTGGCCACTCGCGCCCTA
CTGATCTTTAACGTTTTTTTTTTCAATTACCAATCCTTTTCCATTCTTAT
CCCCTCTTTTCCCATCATCCACCCCTTGGTTCGCATCTACCGTACCTTTC
TTTCAACACCTTGCCCTCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_m12.g1 MSMg01no073_m12.g1 CHROMAT_FILE:
MSMg01no073_m12.g1 PHD_FILE: MSMg01no073_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:57 2005
         (196 letters)



>mm_chr7_143442908_143443503
          Length = 596

 Score =  323 bits (167), Expect = 4e-93
 Identities = 188/195 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcgtcatcatcaggaggctcagacttcttccctcggacatcagaactacagtttgttc 60
           |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 201 ctgcgtcatcatcaggaggctcagacttcttccctctgacaccagaactacagtttgttc 260

                                                                       
Query: 61  ttctcagaatctctgccatctttctggatctagttctggggtctcactttcctttccctc 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctcagagtctctgccatctttctggatctagttctggggtctcactttcctttccctc 320

                                                                       
Query: 121 tcattacaagcaagtgccatcctgcatcctggcacttcctgtctcagcgctgatagatca 180
            |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 321 acattacaagcaagtgccatcctgcatcctggcacttcctgtctcagtgctgaaagatca 380

                          
Query: 181 ggcacagagcagctg 195
           | |||||||||||||
Sbjct: 381 gacacagagcagctg 395


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 596
Length adjustment: 8
Effective length of query: 188
Effective length of database: 588
Effective search space:   110544
Effective search space used:   110544
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)