BAC Information

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BAC

Clone NameMSMg01-074B10
Chromosome7 (Build37)
Map Location 15,577,062 - 15,577,405
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629203, LOC677512, EG629219, EG434123, 2810007J24Rik, EG638251, B430211C08Rik, EG194588, LOC666352, EG666312, LOC666365, LOC671978
Downstream geneLOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074B10.T7 (MSMg01no074_b10.b1)MSMg01-074B10.TJ (MSMg01no074_b10.g1)
ACCAG297226AG297227
length715711
length of high quality
(start - end)
668 (45 - 712)530 (72 - 601)
definitionCHROMAT_FILE: MSMg01no074_b10.b1 PHD_FILE: MSMg01no074_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:21 2005CHROMAT_FILE: MSMg01no074_b10.g1 PHD_FILE: MSMg01no074_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:21 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGACCCACTCCTAAATATAATAGAAGCAATTTACTGCAAATCAAT
AACCAATATCAAATTAAATGGAGAGATACATGAAAGTGCTTCCGCTAAAA
TCAGGAACAAGAGAATGATGCACACCTTCTGAATATGTATTCAATATGGT
ACTCAAAGTTCTACCTAGAATAATAAGACAACCAAAATGGATAAAGAGGA
TACAAAATTGGCAAAGAGGAATTAAAGGTATCACTCTTTGAAGAAGGTGT
GACAGTATACATGAATGACCCCAAAAATAATACCAGAGAACGTCTACAGC
TGATAAACTCAGTTAAGGTGACTGGATAAGAAATTAATTGAAATAAATCA
TAAGCCTTCCTTTATGCTGATGATAAACAGACTGAGAAAGAAATTAGAGA
ATCAACACCCTTCACATCAGACACAAATAATATAAAATATCTTGGAGTAA
GTAACCAAACACATGAAAGATTTGTATGACAATAATTTCAAGTCTCTCAA
GAAAAAAATCAAAGAAGATCTCAGAAAATGGAGAAATCTCCCATGCTTAT
GGATTGGAAGAATTAACAGAGTAAAAAGGGCTATCCTACCAAAGGCATTC
TATAGATTCAATTTCAAACCCATCAAAATCCCAACACAATTCTTCAAACA
AATGAACAGGGAAAA
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAAACTAACTTTCCAGAAAAGAACTTTAA
AGTTGTCCTTTCAGAGCAGAAATTTAAATTTGGGCATGTGGATCCAGAAA
AAAACACCTTCCTTTGCCTTTCAGAGTGGCTCAAATACAGAATTTAAGTC
AATCAAAGATTGATATATTGTAGACATCAGGAAATCAAGGCCCATTCCTA
AACATCCTAGAATCAAATTACTGCAAACAAACATCCAATATCAGATTAAA
TGTAGTGATACTTGAAGCAATCACTTAAATCAGGGACAAGACAATGATGC
ACACTCTCCCCATATATATTCAATATAGTACTCAAAGTTCTAACTAGAGC
ATTAAGACAATAAAAAGGTATCAAGGGGATGGCAAAGAAGAATTAAAGTT
ATCACTGATTGCAGATGATATGAGTGTCCATGAGTGACCCCAAAAATACT
ACCAGAGAACTTCTACATCTGATAAACAGCAAAGTGACTGAATGTGAAAT
TAACTCAAATAAATCATTAGCTTTCTTTATACCAGTGATAAACAGGCTGA
GAAAGACATTGGGAAACAACATCCTTCACACTAGTCACAAATAATATAAA
ATCTTACGGTAACTCTAACCAAACAAATGAAAGATCTATATGACAATGAC
ATCAAGTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_b10.g1 MSMg01no074_b10.g1 CHROMAT_FILE:
MSMg01no074_b10.g1 PHD_FILE: MSMg01no074_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:21 2005
         (530 letters)



>mm_chr7_15577062_15577991
          Length = 930

 Score =  580 bits (300), Expect = e-170
 Identities = 333/344 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaactaactttccagaaaagaactttaaagttgtcctttcagagcagaaatttaaattt 60
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 344 aaaactaactttccagaaaagaattttaaagttgtcctttcagagcagaaatttaatttt 285

                                                                       
Query: 61  gggcatgtggatccagaaaaaaacaccttcctttgcctttcagagtggctcaaatacaga 120
           |||| ||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 284 gggcttgtgggtccagaaaaaaacaccttcctttgcctttcagggtggctctaatacaga 225

                                                                       
Query: 121 atttaagtcaatcaaagattgatatattgtagacatcaggaaatcaaggcccattcctaa 180
           ||||||||||||||| ||||||||||||| ||| |||||||||||||| |||||||||||
Sbjct: 224 atttaagtcaatcaaggattgatatattggagagatcaggaaatcaagtcccattcctaa 165

                                                                       
Query: 181 acatcctagaatcaaattactgcaaacaaacatccaatatcagattaaatgtagtgatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 acatcctagaatcaaattactgcaaacaaacatccaatatcagattaaatgtagtgatac 105

                                                                       
Query: 241 ttgaagcaatcacttaaatcagggacaagacaatgatgcacactctccccatatatattc 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 104 ttgaagcaatcacttaaatcagggacaagacaatgatgcaaactctccccatatatattc 45

                                                       
Query: 301 aatatagtactcaaagttctaactagagcattaagacaataaaa 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  aatatagtactcaaagttctaactagagcattaagacaataaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)