BAC Information

Click to search

BAC

Clone NameMSMg01-074D22
Chromosome7 (Build37)
Map Location 38,772,683 - 38,773,165
singlet/doubletsinglet
Overlap geneC80913
Upstream geneLOC100043874, Zfp536, LOC100043453, EG627844
Downstream geneCcne1, 1600014C10Rik, Plekhf1, Pop4, LOC668519, LOC100043464, 1700010N08Rik, EG627975, EG625594, EG627983, EG434171, LOC100043467
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074D22.T7 (MSMg01no074_d22.b1)MSMg01-074D22.TJ (MSMg01no074_d22.g1)
ACCAG297346AG297347
length710770
length of high quality
(start - end)
237 (72 - 308)483 (127 - 609)
definitionCHROMAT_FILE: MSMg01no074_d22.b1 PHD_FILE: MSMg01no074_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:33 2005CHROMAT_FILE: MSMg01no074_d22.g1 PHD_FILE: MSMg01no074_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATTTGCGGCGCTAAACGATCACTAATCCGAGGGAGGCGCGGAATTCT
TTGAGTTACAAACAAAGTATAAATATATTTGATCACGACATGATTTATCC
AATCTGCCCTTAGGCCCTTCCATATCCTCCCAAAGATGTCCCATCCACAC
TTCATTTCTCTGTCTTCTTTTTAATGACCTAGTGTGTCCAATTACAGATG
TCCACGTGCATATAGGTATGGGGCAATCCAGTGAAGCTTTGGCAATTTGC
CAGTGGTCACACTTCCAAAGAAATATGACTTTACCTGCCCCCAGCAGCCA
TAAACTGCCGTTAGTACTGAGGATAGGGCTCCTGGGCCTCTCCCATATAC
ATGTTGTTATCCCGCCTGGCTTAATCGTGTGCAGGTATTAGGCATATACC
CACAGTTACAGTGAGCTCATGATTGCAGTAACAGTGTTATAGCCACAGTA
CAGCACTTAACAACTCTTCTCCTCTCCCTATGGCTCTGACGGTCTTTCTG
CCCCCTCTTCTGCAGCAGTCTCCCAGTCTAGCCTTGTTGGCTGAGACAGA
GGACTGATATGTACGCTTCATCTAGGATTGAGTGTTTCGGCCTCTTATTT
GCAACACTTTGATCATTTATAAGTCCTGCATAAGCACTTCCCACTGCCAA
ATACTTTCTTTGATTTTGACAATGTTACATGCCGGCGCGTTTGCATGTGT
GTAAGTTTTC
NTTTTTNNNTTTTNCCCNNCCTCCCTCCCCCCCCCNNCCCCGTTTAGTAN
NNATCGATGATAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCCCCACTAGTTGGCAAGAAC
AGTGGTTCCTTCTTCAACAGTGTTCATGGCAACTTCCCTAGACTTCAGGA
CACTGAAGGAAGCTGTCGTTTCTTATGATAGCAGTAGTCATCTGTCTGCT
TGTACCATGCCTGAATTGAACTTTTCTTTATTTTCTTAATTCTAGAGGTG
GCCCAGGGACTCTTCAGGGCAGTGGAACTTTAATGCAGATGGATTGTGAA
TTTTAGAAAGGCCTGCTGGGTTTGAGTGATGGCCTCTGATATAGCCCAGG
GCCCTGTTGCAGAGGAGTGAACTGAATTGAGAGTAGGCTTTCTTAGATGC
TTCTGGGATAGTTCTAGAGTGGTGACGATGAATTCAGTAGCTTCTGTTGT
CTCCTCTATATTTCAGAAGCGCTAGGTTTCATTGTTTCTTAGCTTTGGCT
TTTGGCTATAGATTATAACCCATGTATTTGCAGTAATGTGTGTTTTCTGC
TTTTTTGTTTGTTTAGCAGGTTAGGTAAAGGGAAAGAAATGTTGAAAGGC
TTCCACCAAGAAGAAAGTTCAGTGCTATTTAGATAATTTCAGCCAGTTTC
CCCACTACTTCCGTACAGTTGGAAGATTCTACTCTTCTAATCTGAGATTT
CTTTTTCTCCTTTTAAAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_d22.g1 MSMg01no074_d22.g1 CHROMAT_FILE:
MSMg01no074_d22.g1 PHD_FILE: MSMg01no074_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:33 2005
         (483 letters)



>mm_chr7_38772483_38773365
          Length = 883

 Score =  913 bits (472), Expect = 0.0
 Identities = 481/484 (99%), Gaps = 2/484 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttccccactagttggcaagaacagtggttccttcttcaacagtgttcatggcaacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctttccccactagttggcaagaacagtggttccttcttcaacagtgttcatggcaacttc 624

                                                                       
Query: 61  cctagacttcaggacactgaaggaagctgtcgtttcttatgatagcagt-agtcatctgt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 623 cctagacttcaggacactgaaggaagctgtcgtttcttatgatagcagtga-tcatctgt 565

                                                                       
Query: 120 ctgcttgtaccatgcctgaattgaacttttctttattttcttaattctagaggtggccca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctgcttgtaccatgcctgaattgaacttttctttattttcttaattctagaggtggccca 505

                                                                       
Query: 180 gggactcttcagggcagtggaactttaatgcagatggattgtgaattttagaaaggcctg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gggactcttcagggcagtggaactttaatgcagatggattgtgaattttagaaaggcctg 445

                                                                       
Query: 240 ctgggtttgagtgatggcctctgatatagcccagggccctgttgcagaggagtgaactga 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgggtttgagtgatggcctctgatatagcccagggccctgttgcagaggagtgaactga 385

                                                                       
Query: 300 attgagagtaggctttcttagatgcttctgggatagttctagagtggtgacgatgaattc 359
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 384 attgagagtaggctttcttagaggcttctgggatagttctagagtggtgacgatgaattc 325

                                                                       
Query: 360 agtagcttctgttgtctcctctatatttcagaagcgctaggtttcattgtttcttagctt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtagcttctgttgtctcctctatatttcagaagcgctaggtttcattgtttcttagctt 265

                                                                       
Query: 420 tggcttttggctatagattataacccatgtatttgcagtaatgtgtgttttctgcttttt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggcttttggctatagattataacccatgtatttgcagtaatgtgtgttttctgcttttt 205

               
Query: 480 tgtt 483
           ||||
Sbjct: 204 tgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)