BAC Information

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BAC

Clone NameMSMg01-074E17
Chromosome7 (Build37)
Map Location 128,736,290 - 128,736,456
singlet/doubletsinglet
Overlap genenone
Upstream geneE130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e, Cdr2, 4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6, Otoa, LOC668556, Hs3st2
Downstream geneUsp31, Scnn1g, Scnn1b, Cog7, Gga2, Ears2, Ubfd1, Ndufab1, Palb2, Dctn5, Plk1, Ern2, 2010110P09Rik, Prkcb1, LOC668486
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074E17.T7 (MSMg01no074_e17.b1)MSMg01-074E17.TJ (MSMg01no074_e17.g1)
ACCAG297384AG297385
length707708
length of high quality
(start - end)
99 (122 - 220)170 (150 - 319)
definitionCHROMAT_FILE: MSMg01no074_e17.b1 PHD_FILE: MSMg01no074_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:37 2005CHROMAT_FILE: MSMg01no074_e17.g1 PHD_FILE: MSMg01no074_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CCAGAGTCCCATCTCCCAAGTGATTCTGGATTCAGTCAAGGTGATAGTTA
ACTGTAACCACCGCTCACCGCCATGAATCTCTTCCTTACAGAGATGCCCC
TCCTCCTCGCTATCACATTCTATTTAGGATTTTCCTCCAGATGGTTACAA
TGATGGCTTTTCTCCTGAATAAAACTCACATACTCTCTCCTCTCTGCTGC
CCAGACTCCTCAGTACCGAGACCCACCTGCTGCAGCGGTAACAGTGTTCC
CACAGGACATTAATTTGTTCTGTGGCTTTCCAGACCAGATGACAAATGTT
TTTGTTGTTCCCCCCTCCCCCCCCCCACAAGCTTCCTATCCTTTTTAGCA
TCTTAGCCCCCAAACAGAAAAAAAAGTCAAGTTTTGACTAATTGACATTC
AACACAATTACATAATCCATTAGACCTACCATTTATGCCTTTATATTCCA
TATCAGACATGTTTACTTCATATCCTGTCAGACCTTTTACAATTACCTGA
TTCGCCCCTGCCCTCTTTTTTGACCCCGACCACTCCTTTCTGCTTGTCCT
CCACTGCCACACCCCTATTACTTCCCTCTCCTTACTATCCCGCCTCCGCC
TTCCTGTTTTTGCCCTCCTTATTTTCCTCACTTCCCCATACTCTTTGCCA
ATTCACC
CCTGATCGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATGCCTCAGCTTTTCCACAGAGCTAG
ATTATGCATACATGTGCCTCCCTCTGTTCTGTTTTACAGGCTAGCTGGGG
ATCTGAACTCCGGTCCTCATGCTTGCATAACACGACTTACTGACTGAAGC
ATCTCTCCACTCCCTCAAAATCCTCTTAGAAGAATGAACATATATATTGA
GAGAGAGACCCTTACTTCTGAAAGGACCACTGACAAAAGTCACTTCTGAG
TTTTCTTTTTCCCACCTTTTCAAGGTACAGTGTCTGAGAATGAAACAAGC
ACAGATTTTTTTTATCCCCCCCCCCCCCAGAGGGGCAGAAACGTGATGAT
GAAGGGGCGCCTCCCCTTCTTAACTATAACAGTATCCTTTCTCTGTGTCC
AGACTGAAGCCTCCTCCCCTGTCCCGCTTATATATGTGGAGCGCCACATC
TGCTTCTTATCACATCCACTTCCGCCGCCGGTATACTTCTGTTTCTTCGT
ACGACACCTTGTAACAAACGCCCCTGCCTGCCCTGGTGTCCCGCCCGACT
TTCCCATTATCCACCCCCCAGTTCCATCTATCATTTAACCCCTTTTCTCC
ATTCATTTTTAAATATTATATCACTCCTTCATAACCCATGCCTCCCCCTG
CCTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_e17.g1 MSMg01no074_e17.g1 CHROMAT_FILE:
MSMg01no074_e17.g1 PHD_FILE: MSMg01no074_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:37 2005
         (170 letters)



>mm_chr7_128736025_128736594
          Length = 570

 Score =  292 bits (151), Expect = 7e-84
 Identities = 163/167 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatctgaactccggtcctcatgcttgcataacacgacttactgactgaagcatctctcca 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gatctgaactccgatcctcatgcttgcataacacgacttactgactgaagcatctctcca 373

                                                                       
Query: 61  ctccctcaaaatcctcttagaagaatgaacatatatattgagagagagacccttacttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 372 ctccctcaaaatcctcttagaagaatgaacatatatattgagagagagacccttggttct 313

                                                          
Query: 121 gaaaggaccactgacaaaagtcacttctgagttttctttttcccacc 167
           |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 312 gaaaggaccactgacaaaagccacttctgagttttctttttcccacc 266


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)