BAC Information

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BAC

Clone NameMSMg01-075B11
Chromosome7 (Build37)
Map Location 48,602,303 - 48,602,526
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039094, 2900093B09Rik, 4930433I11Rik, EG233164, LOC668555, EG627987, LOC100039269, LOC545955, EG628304, LOC668561, EG434172, LOC100039221, LOC668565
Downstream geneAI987944, EG269902, LOC100039375, EG628359, 2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075B11.T7 (MSMg01no075_b11.b1)MSMg01-075B11.TJ (MSMg01no075_b11.g1)
ACCAG297991AG297992
length663710
length of high quality
(start - end)
224 (364 - 587)192 (78 - 269)
definitionCHROMAT_FILE: MSMg01no075_b11.b1 PHD_FILE: MSMg01no075_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:40 2005CHROMAT_FILE: MSMg01no075_b11.g1 PHD_FILE: MSMg01no075_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXCATTACCGACGGAGCCGCGGAATTC
TTTCATACTTAAAACACATAGAGAAAATCATCTTGTTCTATATGAAAAAA
AAAGAACATTTCGCAGTTGTTACTGAGGTATCCTACAACCCCCTCTCAAA
TTCCAATGTTGAACCTAACCTCTAGTATAAGTATTTTTAGATAAGACCTT
TAGGGAGAATAAATGATTCATAGGGTGAGATGTTAATTGAATGGACCAGT
ATCATTATAAGAAATATTAGAGATTGTCTTCCTTGGGGATAGACAATATA
AACAGTTAGATGAGATTGTTGAACAGTCAGGAGGTCTTTGCAGAAACTAA
CCTTGGCAGCCGCCTGGGTATCAAATAGAGCTCCTAATCGTTCTTCCCCC
TTGGCTTCTATTGGCAGCCTCCTTGGGGCCCAAGTTTCTATAGTGCATGG
TTTACATTCAGCAGAGCTGATTATCACATGTTGGTCTCTTTACTTGATAT
CTCATTTCTACCAAAGTCCTGCTTCTTAAAAAGAGAATCACAAAGGTGCT
AGAGAGATAGCTCAGCAGATAAGAGCTATGATGGCTCATCCAGAAGTCAA
TTAGTCAAATATTTTGTTCACATTATTGTTTCTTTTCTTGCTGGAATATT
GCATATATATATA
NCACGATGACTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTTAACAGAAATGTAAGGTTTT
CAATGGTATGAATTTATTGACATAAAAACTGGGATTAATATTGTTACTCT
CATATAGGCATTGTGCTGTTCAACGCATAGCTGGGTAATATAGTAGTAGA
GTGATAGATCTGCCCAATCTATGTGTACAGCTTGGACTCATAGTAATTGA
GTAGTGTTTTATTGCACTGGCTTATTGGAGTTGAAGCTTTAGCTAAACTT
CTTCTCCACGAGGCCAGTTCTTTTTTTTACCCCTTCACCTATCCTTCTAC
AACTACTGATAACTTGTTCTGCCCCCCACTTTTTTATTTTGTGTTATAAC
ATTTTTTTTTTTTTACGCCCCCCCCCTTCCTTTTTAGTATATCTTTTGAT
ATAATTGTGTTTATTTTTTTTTTTCTTGTTCGTTTTCCTGTTCCATATTC
TTGTCTTTCTTTTCTCATTCTTCTACTATCTTTCTATCTTTATTTTTCTT
CTCATTTCTCTTTATAATTTATCGTTTTTTCTTTCTTTATCCTTATTTTC
TCCTACTTCCTAACCTCTCCTTCTCCTCTTCTATCTTTCTCCCCGTATAT
CTACATCACTTATTTCTATTCTTTTTTCTATACTCCTTTCTCTTGTCATT
TCATTAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_b11.b1 MSMg01no075_b11.b1 CHROMAT_FILE:
MSMg01no075_b11.b1 PHD_FILE: MSMg01no075_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:40 2005
         (224 letters)



>mm_chr7_48602103_48602726
          Length = 624

 Score =  410 bits (212), Expect = e-119
 Identities = 221/224 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgggtatcaaatagagctcctaatcgttcttcccccttggcttctattggcagcctcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 424 ctgggtatcaaatagagctcctaatcgttcttcccccttggcttctattggcatcctcct 365

                                                                       
Query: 61  tggggcccaagtttctatagtgcatggtttacattcagcagagctgattatcacatgttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tggggcccaagtttctatagtgcatggtttacattcagcagagctgattatcacatgttg 305

                                                                       
Query: 121 gtctctttacttgatatctcatttctaccaaagtcctgcttcttaaaaagagaatcacaa 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 304 gtctctttacttgatatctcatttctaccatagtcctgcttcttaaaaagagaatcacaa 245

                                                       
Query: 181 aggtgctagagagatagctcagcagataagagctatgatggctc 224
           |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aggtactagagagatagctcagcagataagagctatgatggctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)