Query= MSMg01no075_e15.b1 MSMg01no075_e15.b1 CHROMAT_FILE:
MSMg01no075_e15.b1 PHD_FILE: MSMg01no075_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:55 2005
(239 letters)
>mm_chr7_88028828_88029466
Length = 639
Score = 381 bits (197), Expect = e-110
Identities = 222/239 (92%), Gaps = 14/239 (5%)
Strand = Plus / Minus
Query: 1 gagccaagcagcaatggtctcaatcttgataggcacagggcttaaatttctcctcccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gagccaagcagcaatggtctcaatcttgataggcacagggcttaaatttctcctcccttc 277
Query: 61 tctgtaatccctctcctatgccttccaccagggtaagaacgtccaaaacaaaacaaacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tctgtaatccctctcctatgccttccaccagggtaagaacgtccaaaacaaaacaaacaa 217
Query: 121 caacaacaaaaacattattttttccttttcttttctttttcttttctcatttttcttttc 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 caacaacaaaaacattcttttttccttttcttttctttttcttttctcatttttcttttc 157
Query: 181 tcatttttcttttctctttcttttttttttttcatgtctttaaggcatttattgtagaa 239
|| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 156 tc--------------tttcttttttttttttcatgtctttaaggtgtttattgtagaa 112
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no075_e15.g1 MSMg01no075_e15.g1 CHROMAT_FILE:
MSMg01no075_e15.g1 PHD_FILE: MSMg01no075_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:55 2005
(486 letters)
>mm_chr7_87857980_87858865
Length = 886
Score = 861 bits (445), Expect = 0.0
Identities = 475/487 (97%), Gaps = 5/487 (1%)
Strand = Plus / Plus
Query: 1 aaaagtaattgctctttttctcctgaagctgcttcatttgaacagagaacagtaacttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagtaattgctctttttctcctgaagctgcttcatttgaacagagaacagtaacttgg 260
Query: 61 attagctctgcccacaaaggcagcagccggaagacatcagactccatcctctgactgcgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attagctctgcccacaaaggcagcagccggaagacatcagactccatcctctgactgcgc 320
Query: 121 cgatgggttgtacttctggtgaatttgatgtgcatgcttgctatcaacctgacagctttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgatgggttgtacttctggtgaatttgatgtgcatgcttgctatcaacctgacagctttc 380
Query: 181 acttctaaacgagaatttgaatttcaccattcttattgctaagtaaaacaaataccaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttctaaacgagaatttgaatttcaccattcttattgctaagtaaaacaaataccaatg 440
Query: 241 tctacaaagtattaatgaccacttaggaggctttaacagaaaggggttgggagggggtcc 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctacaaagtagtaatgaccacttaggaggctttaacagaaaggggttgggagggggtcc 500
Query: 301 cactctttcctacatgatgagagaaaatgagggagcagggctgacgccaagccaggctta 360
|||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct: 501 cactctttcctacatgatgagagaaaatgagggagcagggctgaggggaagtcaggctta 560
Query: 361 tggcttcacaaggagaagggagagggcactgacgtccgtccgtccgtccgtcagagggag 420
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 tggcttcacaaggagaagggagagggcactgacgtccgtccgtccgtc----agagggag 616
Query: 421 tgtgaactgaggtgccgccactggaccaggtccttgcttctaaggaataatggaggatc- 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgtgaactgaggcaccgccactggaccaggtccttgcttctaaggaataatggaggatcc 676
Query: 480 tagaaag 486
|||||||
Sbjct: 677 tagaaag 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
