BAC Information

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BAC

Clone NameMSMg01-075I15
Chromosome7 (Build37)
Map Location 110,641,848 - 110,642,419
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609
Downstream geneOlfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075I15.T7 (MSMg01no075_i15.b1)MSMg01-075I15.TJ (MSMg01no075_i15.g1)
ACCAG298330AG298331
length707713
length of high quality
(start - end)		563 (48 - 610)576 (76 - 651)
definitionCHROMAT_FILE: MSMg01no075_i15.b1 PHD_FILE: MSMg01no075_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:13 2005CHROMAT_FILE: MSMg01no075_i15.g1 PHD_FILE: MSMg01no075_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTCTTTGTTCCTCCTTCCTCTTGAGCTTCATGTGGTCCATGAG
TTGTATTGTGGGTATTCCATGCTCTTTGCCTAATATCCACTTATGAGTGA
GTACATACCATGTGTGTTCTTTTGTGACTGAATTACCTCACTCAGGATGA
TATTTTCTAGATCAATAATTTGGCCAAGAATTTGGTCAAGTCATTGTTTT
TAATAGCCGAATAGTACTCCATTGTGTAAATGTACCACATTTTCTGTATC
CATTCCTCTGTTGAAGGATATTGTTTTGTTTCCAGATTCTGGCTATTATA
AATATGGCTGCTATGAACATAGTGGAGCATGTGTCCTTATTACATGTTGG
AGCATCTTCTGGGTATATATCCAGGAGTGGTATTGCTGAGTTCACAGGTA
GGGCCATATCCAATTTTCTGAGGAATCGACAAACTGATATCCAGAGTGGT
TGTACTAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTTG
ACAGCCTTATCAGCATCTGCTGTCACATGAATTTTTTATCTTACACATTC
TGACTGGTGTGAGGTGGGATCTCTGGGTTGTTTTGATTTGCATTTCCCTG
ATGCCTAATGATGTTGCACTTTCCTTTACGTGTTTTGCACCCCTCCGTAT
TCCTCTG

NCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTTACTTTTTTCTTTCACATATAA
AAATAAATTAGTATAATTTGCTACATATGTCCTTGTTTAAAGCACTTTAT
AAAAATATGCACTATTCAAAATATTTTATTTTATTTGCATAAATGTTTTG
TATGTATGCATCCAATGTGTTTTCCTGGTGCCTGCAAAGGTCAGAAGAGA
ACACTGGATTCTCTCGAATATGGTTGTAAGCCACCATGTAGGTACGGGGA
ATCAAACCCTGGTCTTTTGCAAGATTCATAAAGTGCTATAAAACACTGAG
TCAGGCACTGGCAGAGCCTCTCAGGCGACAGTTATATCAGGCTCCAATCA
GCAAACACTTGTTGGCATCTACAATAGTGTCTGGGTTTGGTGATTGTATA
TGGGATGAATCCCTAGGTAGGGCACTCTCTGGATTGCTTTTCCTTTAGTC
TCTGCTCCACACTGACAAATACAGAGGTGGATGCTCTCAGCCATTCATTG
GACTGAGCACAAGGTCCCCAATTGAGGAGCTAGAGAAAGGATCCAAGTAG
TTGAAGGAGTTTGCAGCCCCATAGAAGGAATAACAATATGAACCAACCAG
TATCCCCAGAGCTTCCAGGGACTAAAACACCAAACAAAGGGTACACATGG
AGGGACCTATGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_i15.g1 MSMg01no075_i15.g1 CHROMAT_FILE:
MSMg01no075_i15.g1 PHD_FILE: MSMg01no075_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:13 2005
         (576 letters)



>mm_chr7_110641648_110642623
          Length = 976

 Score = 1023 bits (529), Expect = 0.0
 Identities = 562/573 (98%), Gaps = 1/573 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttacttttttctttcacatataaaaataaattagtataatttgctacatatgtccttg 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 tgttacttttttctttcacatataaaaataaattactataatttgctacatatgtccttg 260

                                                                       
Query: 61  tttaaagcactttataaaaatatgcactattcaaaatattttattttatttgcataaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaaagcactttataaaaatatgcactattcaaaatattttattttatttgcataaatg 320

                                                                       
Query: 121 ttttgtatgtatgcatccaatgtgttttcctggtgcctgcaaaggtcagaagagaacact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttgtatgtatgcatccaatgtgttttcctggtgcctgcaaaggtcagaagagaacact 380

                                                                       
Query: 181 ggattctctcgaatatggttgtaagccaccatgtaggtacggggaatcaaaccctggtct 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 ggattctctcaaatatggttgtaagccaccatgtaggtacggggaatcaaacccttgtct 440

                                                                       
Query: 241 tttgcaagattcataaagtgctataaaacactgagtcaggcactggcagagcctctcagg 300
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgcaagag-cataaagtgctataaaacactgagtcaggcactggcagagcctctcagg 499

                                                                       
Query: 301 cgacagttatatcaggctccaatcagcaaacacttgttggcatctacaatagtgtctggg 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgacagttatatcaggctccaatcagcaaacacttgttggcatctacaatagtgtctggg 559

                                                                       
Query: 361 tttggtgattgtatatgggatgaatccctaggtagggcactctctggattgcttttcctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 560 tttggtgattgtatatgggatgaatccctaggtagggcactctctggatcgcttttcctt 619

                                                                       
Query: 421 tagtctctgctccacactgacaaatacagaggtggatgctctcagccattcattggactg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| 
Sbjct: 620 tagtctctgctccacactgacaaatacagaggtggatgctctcagccatacattggacta 679

                                                                       
Query: 481 agcacaaggtccccaattgaggagctagagaaaggatccaagtagttgaaggagtttgca 540
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 680 agcacaaggtccccaattgaggagctagagaaaggacccaagtagttgaaggagtttgca 739

                                            
Query: 541 gccccatagaaggaataacaatatgaaccaacc 573
           |||||||||||||||||||||||||||| ||||
Sbjct: 740 gccccatagaaggaataacaatatgaacaaacc 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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