BAC Information

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BAC

Clone NameMSMg01-075M22
Chromosome7 (Build37)
Map Location 36,556,888 - 36,729,754
singlet/doubletdoublet
Overlap genezfp507
Upstream geneChst8, Pepd, Cebpg, Cebpa, Slc7a10, Wdr88, Gpatch1, Rhpn2, C230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3
Downstream geneLOC100043872, EG668988, LOC668507, Tshz3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075M22.T7 (MSMg01no075_m22.b1)MSMg01-075M22.TJ (MSMg01no075_m22.g1)
ACCAG298536AG298537
length733727
length of high quality
(start - end)
246 (70 - 315)486 (65 - 550)
definitionCHROMAT_FILE: MSMg01no075_m22.b1 PHD_FILE: MSMg01no075_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:34 2005CHROMAT_FILE: MSMg01no075_m22.g1 PHD_FILE: MSMg01no075_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,729,509 - 36,729,754)(36,556,888 - 36,557,373)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTACTCCATCACGCGGATTCAAT
GTCTGGTTCGCTTCAGCATGGAACACTGCAATCGTAAACATGGGTGTGCA
GTTATCTCTGTGTCATGCTTAAAGTCCTTAGGGTAAGTACCCAGGAGTGC
TGGATCGTACCATAGTTATATTTTTAGCTGAACCAGACCAAGAGGCCTGA
TCTCCCTACCCTGCCTGCCTGCCACCATTTGCTGTCTTGTTTTCTTGATG
ACAACCATTTTGATTAATATAAGAGCAAATGTCCTTTTTTTTTTACTTTT
GTGAGTCAGAGTCTCTTGTTTTTCAGGCTGCCCATAGTAAGGATGACTTT
AACTTCTGATTTCCTACCCCCCACCCTTGCTAAGTGCAGTGATAGGAATC
AAACCCAGGGTCCCACCCCCGCCCAGCAAGTAGTCAACCCATTGAACTAT
ATCCCTACCCCTTCAATGCAATTGCGATTTACCTTTCTCTGATGACTAAG
AGTGTCAATTCTTTTCACTTATTTATTTGGCCATCTACACCTTCATTTTT
ATAACTATTCCTTTGATTTGTTTGACCGCTTATTTAACGAGTATTGCGCA
ACTTTTTTTATGTATAACCTTTTTCAGGATCCCTACCATTGCTACAAAAT
TACCTCCGTTCCTATTAACAGTTGGCCAACCACAAAAAGCAACATTTTGT
CCCCCATTCCGGGACGGTTAATGCCTTCCCTTC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCCCAATTCTTTGTTTTGAGTCACTTCCAGCTGGGAGGGCC
TGGGATCCTAGGGCACGAACTGGGGGAAGCAAACCCAGTGCTGTAGTCAT
TAGAGCACCTGTGGCCTCTGCAAGGAATCGACTGTAAGAGATTGTTTGGT
GATAGGCTACGAGAGGATCGAAGTATGAGGAGCGTTGTAGTCGGTGGCCT
TCAGCAGTTCTAATTACAGGAAGGGAGCCGGCACCCCCAGCTCAGCACTG
GAAGCATCGTCATGTCTGCTGTGTAAGCTAAAGGACTGTTGAACAGGGGA
GAAGGCCCAGAGCCCATGCTTGTGAAACGCAGCCCTGGCGCGTCAGGGCT
ACCTCAGCAACTTAACACACCCTAACAGTAAACCCCAACCAGCTCCCGGG
AAGCTTTCAGTGGCTTANATGCAAGTTTCTAACTCAACAAACCCAAGACA
GGAATACACGCAGACAGCTAAGGAAACTTAGAAACAAGTTGTTTTTTAAC
AAAAAAAAAAATTTATTACCAAAATACAATATTTTAAGTCTATACATGGC
AAACTCCTGTAAAGCAAAATAAATTACTCTAATTTTGGACAGTTCTTCTG
ACAATTAAGAGGTGCCCGCCCAGAGAGCTTGCTGCACCTCACTTCTTCTA
ACCCAGTGGNCCTGTGCTGCCCACATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_m22.b1 MSMg01no075_m22.b1 CHROMAT_FILE:
MSMg01no075_m22.b1 PHD_FILE: MSMg01no075_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:34 2005
         (246 letters)



>mm_chr7_36729199_36729844
          Length = 646

 Score =  437 bits (226), Expect = e-127
 Identities = 241/246 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaacactgcaatcgtaaacatgggtgtgcagttatctctgtgtcatgcttaaagtcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ggaacactgcaatcgtaaacatgggtgtgcagttatctctgtgtcatgcttaaagtcctt 497

                                                                       
Query: 61  agggtaagtacccaggagtgctggatcgtaccatagttatatttttagctgaaccagacc 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 496 agggtaagtacccaggagtgctggatcataccatagttatatttttagctgaaccagacc 437

                                                                       
Query: 121 aagaggcctgatctccctaccctgcctgcctgccaccatttgctgtcttgttttcttgat 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 436 aagaggcctgatctccctaccctgcctgcctgccaccgtttgctgtcttgttttcttgat 377

                                                                       
Query: 181 gacaaccattttgattaatataagagcaaatgtccttttttttttacttttgtgagtcag 240
           |||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 376 gacaaccattttgattgatgtaagagcaaatgtccttttttttttccttttgtgagtcag 317

                 
Query: 241 agtctc 246
           ||||||
Sbjct: 316 agtctc 311


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no075_m22.g1 MSMg01no075_m22.g1 CHROMAT_FILE:
MSMg01no075_m22.g1 PHD_FILE: MSMg01no075_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:34 2005
         (486 letters)



>mm_chr7_36556688_36557573
          Length = 886

 Score =  872 bits (451), Expect = 0.0
 Identities = 477/486 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctttgttttgagtcacttccagctgggagggcctgggatcctagggcacgaactggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctttgttttgagtcacttccagctgggagggcctgggatcctagggcacgaactggg 260

                                                                       
Query: 61  ggaagcaaacccagtgctgtagtcattagagcacctgtggcctctgcaaggaatcgactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaagcaaacccagtgctgtagtcattagagcacctgtggcctctgcaaggaatcgactg 320

                                                                       
Query: 121 taagagattgtttggtgataggctacgagaggatcgaagtatgaggagcgttgtagtcgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagagattgtttggtgataggctacgagaggatcgaagtatgaggagcgttgtagtcgg 380

                                                                       
Query: 181 tggccttcagcagttctaattacaggaagggagccggcacccccagctcagcactggaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggccttcagcagttctaattacaggaagggagccggcacccccagctcagcactggaag 440

                                                                       
Query: 241 catcgtcatgtctgctgtgtaagctaaaggactgttgaacaggggagaaggcccagagcc 300
           ||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 catcgccatgtctgctgtggaagctaaagggctgttgaacaggggagaaggcccagagcc 500

                                                                       
Query: 301 catgcttgtgaaacgcagccctggcgcgtcagggctacctcagcaacttaacacacccta 360
           |||||||||||||||||||||||| ||| |||||||||||||||||||||||| | ||||
Sbjct: 501 catgcttgtgaaacgcagccctggtgcgccagggctacctcagcaacttaacagagccta 560

                                                                       
Query: 361 acagtaaaccccaaccagctcccgggaagctttcagtggcttanatgcaagtttctaact 420
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 acagtaaaccccaaccagctcccgggaagctttcagtggcttaaatgcaagtttctaact 620

                                                                       
Query: 421 caacaaacccaagacaggaatacacgcagacagctaaggaaacttagaaacaagttgttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 caacaaacccaagacaggaatacacgcagacagctaaggaaacttagaaacaagtggttt 680

                 
Query: 481 tttaac 486
           ||||||
Sbjct: 681 tttaac 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)