BAC Information

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BAC

Clone NameMSMg01-076B14
Chromosome7 (Build37)
Map Location 144,453,568 - 144,453,825
singlet/doubletsinglet
Overlap geneEbf3
Upstream geneLOC546009, EG621677, EG668771, Mgmt, EG621804
Downstream gene9430038I01Rik, Txnl2, LOC435235, Tcerg1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076B14.T7 (MSMg01no076_b14.b1)MSMg01-076B14.TJ (MSMg01no076_b14.g1)
ACCAG298756AG298757
length692699
length of high quality
(start - end)
258 (67 - 324)103 (212 - 314)
definitionCHROMAT_FILE: MSMg01no076_b14.b1 PHD_FILE: MSMg01no076_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:57 2005CHROMAT_FILE: MSMg01no076_b14.g1 PHD_FILE: MSMg01no076_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGA
ATTCACTCCTCTCCAAATAGGTTCTTTGAGTTGAGGTTACACTGGACTCT
TGCTCCTACCCCATCACTCAGGGATTCACCTTGCTTGTCATTCTTAGACT
TGGGGCTGGAGACCTCAGGCGGAGTGCAGCTCTGTCTTAGTTTTGATGGC
TTCCAGAGGGCCCCTCACATGCATTATCCAACATGGCGGCCCCAAGCCAC
AGGTAGCACTTGAGACATGAAAGGCGGCTAGTCCCAATGGACACTGGTTA
TGAATGTCCAACACATGACAAATTGCAAAACTCAACATACAAGAGAAAGC
TAAAATAAAAATCTCAATAGATTTTTTAAATTTTAGCTTCAATATTAATA
TACTATTTGGGCCACATGAAGCTAAATTAAAATATTTCTAAAACGAAGCA
CACTTGTTTCTGCCTATTTTCTGAACGCCACTGTATCTATCGCTTGCATT
GATACTTAACCTCTCCATCCATTGGCCTGTGTCAGGCTGCATAGTGGTCA
GGGTGCTCCCCAGGCCATCCCTTGACCGGACCTCGACTTCCCCGTGCAGA
AGCACTGTGGTTGATTCCTCACACTACCTTCCAGTACGATGGATCCACCC
CTCCTGCTGGCCTATAGGGTATCCCCATACAGCTCGGTGAGA
TTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGGAGTTTTATGCAATTGTGA
GTCAGGTGGCATAGGTTCGGGGAACTGAACACATGCACTCTGCAAGAGCA
ATAGATGCTCGTAACCAATAAACCATCTCTCCAGGCCATGGTTTTTGTTC
GTTTGCTTTGCTTTGAAACAATGTCTTTCTACGTAACCCTGGTTGGCTTG
AACTCTCTATGCAGACCAAGCTGGCCTGGAACTCACAGAGATCTGCCTGT
CTCTGCATCCCAAATGCTGGAATTAAAGGTGTATACACCAACAAATCCAG
CCCTGTTTTGTTTTGTTTTAAAGATTTATTCATTTTTATTTATACAAGCA
CACTGCATCTGTTTCTACACACACATCAGAATAATGCACTGGACTCCATT
ACTGATGGTTGTGATCTACCATCTGCCTGCTGGCATTTGAATTCACCTCC
TCTATAAGATCAGTCCCTGTTCTTACCTGCTGATTTATATCTCCAGGCCC
GTTCTGCTTTTACCACCGTTTCCACCAGCTCAAACTACTCCTCATTCCAT
TTTGTTGACGTATTTTTATTTTCTGACCCCCCTTCTTCCTTTTACCCCCC
TTGCTTTCATAATTCCGCCTGGTCTCCTTTTAACCACTTCCTCCATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_b14.b1 MSMg01no076_b14.b1 CHROMAT_FILE:
MSMg01no076_b14.b1 PHD_FILE: MSMg01no076_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:57 2005
         (258 letters)



>mm_chr7_144453368_144454025
          Length = 658

 Score =  484 bits (250), Expect = e-141
 Identities = 256/258 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataggttctttgagttgaggttacactggactcttgctcctaccccatcactcagggatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataggttctttgagttgaggttacactggactcttgctcctaccccatcactcagggatt 260

                                                                       
Query: 61  caccttgcttgtcattcttagacttggggctggagacctcaggcggagtgcagctctgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccttgcttgtcattcttagacttggggctggagacctcaggcggagtgcagctctgtc 320

                                                                       
Query: 121 ttagttttgatggcttccagagggcccctcacatgcattatccaacatggcggccccaag 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 ttagttttgatggcttccagagggcccctcacatgcattattcaacatggcggccccaag 380

                                                                       
Query: 181 ccacaggtagcacttgagacatgaaaggcggctagtcccaatggacactggttatgaatg 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 ccacaggtagcacttgagacatgaaaggtggctagtcccaatggacactggttatgaatg 440

                             
Query: 241 tccaacacatgacaaatt 258
           ||||||||||||||||||
Sbjct: 441 tccaacacatgacaaatt 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 658
Length adjustment: 9
Effective length of query: 249
Effective length of database: 649
Effective search space:   161601
Effective search space used:   161601
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)