BAC Information

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BAC

Clone NameMSMg01-076K10
Chromosome7 (Build37)
Map Location 142,172,889 - 142,342,651
singlet/doubletdoublet
Overlap geneDock1
Upstream geneAdam12, A130023I24Rik, 4933400E14Rik, LOC100043248, LOC100043699, LOC668750, B830028B13Rik, EG668693
Downstream geneLOC100043254, Foxi2, Clrn3, Ptpre, Mki67, LOC668764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076K10.T7 (MSMg01no076_k10.b1)MSMg01-076K10.TJ (MSMg01no076_k10.g1)
ACCAG299176AG299177
length721737
length of high quality
(start - end)		506 (41 - 546)149 (73 - 221)
definitionCHROMAT_FILE: MSMg01no076_k10.b1 PHD_FILE: MSMg01no076_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:42 2005CHROMAT_FILE: MSMg01no076_k10.g1 PHD_FILE: MSMg01no076_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,172,889 - 142,173,389)(142,342,503 - 142,342,651)
sequence
CATAATTTGCGGCGCTAAACGACTCCTATATCCAGAGGATCCGCGGAATT
CAACCAAGCACACTATTTAAATTTAATATTTAATTTTGTTGCTAGTAGTT
TAAAATCCCTAATAGATGGCATTAATGTAGTTTATCAGCCATGCTGCCTT
CAGTTTTATTTTGTGCCTTTTTATAGTCTTCCCTTTGGTTCCTCATAAAA
TAAGGAAATTATGATATTTTGTAAATTAAATGAGTGAAAATTAAGCATAT
GTTGAATAAAGACATCAAGTTATTGAATTTATCCCTCCCCTTTCCGTGCT
TGTGTGTGTGTGTTCACACTCATGAGTGCTCGCATGCGTGCCTGTGTGTG
TACTTCCTTCTCTTCCCTCCCCCTCCAAACCACCCCCTTCCTCCTTCTCC
TGACATGGTTTCCTTTTCTGTGGTCTTCTAATTCATGCCTTAGTGTCTGA
GTTCCTGTTATTCCTGGTTTCTGCATTTTTCTGGGATTCAGAGAAGTCAA
CGGGCTTGTTGCTAGATCATCACCATCTCCCTGCTTCCATATCCACTGGC
CACCACTGCTTGTTCCCTTTTCAGTTTCCAAAATTCTCTTGTCCTTCGTT
CATCCTCACTATCTTGCTCCCCATGACTCTGAGTTGTTGATGCTCCTTTG
AGGTAGAGTCATGCTCTACTATATCCTCGTCTGTCCTGCAACTCATTCTG
TGAACCAGTCCCCCTTGTTAT

CATGCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTATGCAGATGGCAGCTTTCCCAGGGC
TTGCTACCATGCACTCAGGACTGGCCTAAGAAATGTTCATTGCTGGTCTT
TTGCTTCCTGAGTTCTGACTGGAGGTAGGGGAGTTTGAAGGGGTGGTGGT
GGTGACAAGGACCTGCTGGGACATCTTTGCGTGGCCTGTCAAATGTGTTT
TCCGTGCAAAAGTCATGTCCATCCTGTGCGGTAAGGCTGTCCCCATCTGA
CTCCGCAACCATTCTCGACTCTTTTATCTGTCCTGACCTCCACTATCTTG
TTTTTCATGTGTTACATTTCCACCCATCCTCTCTGTTTTCATTCAATCTT
GCACCACCCCATCTCCCCCCCCCGCGCCACTCCTGTCCTTCTTTCCCCCT
TCCTCCCCTCCCCTTCTTCCCCCCCTTCTCCTTCCACTACCTTTCCTATT
ACTTTTACCCCATCTTCCCTCCATCTCCCCTTACTACCCTTCTCTATCTC
CAACTCTTCCGCTCATTCTTCTTCCTCCCCCTTATCGTCCTCCCTTTTCT
TCCTCCCCCTCTTCCCTTTCGCTTATTTCCTCCTTCTCTTCTCCTTTCAT
CTCCCTCCTCTCTCCTCCCTCTCTCTTTTCTCTCCCCCCCTTCCTCCCCT
TTATCCTCCCTCTTCTTTCACTCTTCATTTCCTACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_k10.b1 MSMg01no076_k10.b1 CHROMAT_FILE:
MSMg01no076_k10.b1 PHD_FILE: MSMg01no076_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:42 2005
         (506 letters)



>mm_chr7_142172684_142173589
          Length = 906

 Score =  953 bits (493), Expect = 0.0
 Identities = 499/501 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcaaccaagcacactatttaaatttaatatttaattttgttgctagtagtttaaaa 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaaccaagcacactatttaaatttaatatttaattttgttgctagtagtttaaaa 265

                                                                       
Query: 66  tccctaatagatggcattaatgtagtttatcagccatgctgccttcagttttattttgtg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tccctaatagatggcattaatgtagtttatcagccatgctgccttcagttttattttgtg 325

                                                                       
Query: 126 cctttttatagtcttccctttggttcctcataaaataaggaaattatgatattttgtaaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cctttttatagtcttccctttggttcctcataaaataaggaaattatgatattttgtaaa 385

                                                                       
Query: 186 ttaaatgagtgaaaattaagcatatgttgaataaagacatcaagttattgaatttatccc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttaaatgagtgaaaattaagcatatgttgaataaagacatcaagttattgaatttatccc 445

                                                                       
Query: 246 tcccctttccgtgcttgtgtgtgtgtgttcacactcatgagtgctcgcatgcgtgcctgt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tcccctttccgtgcttgtgtgtgtgtgttcacactcatgagtgctcgcatgcgtgcctgt 505

                                                                       
Query: 306 gtgtgtacttccttctcttccctccccctccaaaccacccccttcctccttctcctgaca 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gtgtgtacttccttctcttccctccccctccaaaccacccccttcctccttctcctgaca 565

                                                                       
Query: 366 tggtttccttttctgtggtcttctaattcatgccttagtgtctgagttcctgttattcct 425
           |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 566 tggtttccttttctgtggccttctaattcatgccttagtgtctgagttcctggtattcct 625

                                                                       
Query: 426 ggtttctgcatttttctgggattcagagaagtcaacgggcttgttgctagatcatcacca 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ggtttctgcatttttctgggattcagagaagtcaacgggcttgttgctagatcatcacca 685

                                
Query: 486 tctccctgcttccatatccac 506
           |||||||||||||||||||||
Sbjct: 686 tctccctgcttccatatccac 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no076_k10.g1 MSMg01no076_k10.g1 CHROMAT_FILE:
MSMg01no076_k10.g1 PHD_FILE: MSMg01no076_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:42 2005
         (149 letters)



>mm_chr7_142342303_142342851
          Length = 549

 Score =  281 bits (145), Expect = 2e-80
 Identities = 148/149 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttatgcagatggcagctttcccagggcttgctaccatgcactcaggactggcctaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 cttatgcagatggcagctttcccagggcttgctaccatgcactcaggactggcctaagaa 290

                                                                       
Query: 61  atgttcattgctggtcttttgcttcctgagttctgactggaggtaggggagtttgaaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 atgttcattgctggtcttttgcttcctgagttctgactggaggtaggggagtttgaaggg 230

                                        
Query: 121 gtggtggtggtgacaaggacctgctggga 149
           | |||||||||||||||||||||||||||
Sbjct: 229 gcggtggtggtgacaaggacctgctggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 549
Length adjustment: 8
Effective length of query: 141
Effective length of database: 541
Effective search space:    76281
Effective search space used:    76281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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