Query= MSMg01no079_b06.b1 MSMg01no079_b06.b1 CHROMAT_FILE:
MSMg01no079_b06.b1 PHD_FILE: MSMg01no079_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:36 2005
(355 letters)
>mm_chr7_121991029_121991783
Length = 755
Score = 543 bits (281), Expect = e-159
Identities = 326/341 (95%)
Strand = Plus / Plus
Query: 5 gaattcattggccccatcttctgagtaatttttaaatgcatagaaaattaatgtaaagct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 205 gaattcattggccccatcttctgagtaatttttaaatgcatagaaaattaatgtagagct 264
Query: 65 ttaaaagggcaccaattatgttaaaacaactattctatacttatgcacatagcatattaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaaaagggcaccaattatgttaaaacaactattctatacttatgcacatagcatattaa 324
Query: 125 aacgtgcttgctcatggtagtaaatactatttggagacaccttcaacatcttttatgaga 184
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatgtgcttgttcatggtagtaaatactatttggagacaccttcaacatcttttatgaga 384
Query: 185 tctgcagatttctgtgttttctgttgaagagcaatgtcagacatcagctagatccagttt 244
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 385 tctgcagatttctgtgttttctgttgaagagcaatgtcagatatcagctagatccagttt 444
Query: 245 gtttcaacattgacaaccaatgaagatgttgttttgagagggattagttgaaagagagag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 445 gtttcaacattgacaaccaatgaagatgttgttttgagagggattagttgaaagaaagaa 504
Query: 305 agagagagagagagagagagagagagagagagagagagaga 345
||| ||| ||| ||| ||| ||| ||| ||| ||| |||||
Sbjct: 505 agaaagaaagaaagaaagaaagaaagaaagaaagaaagaga 545
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space: 258116
Effective search space used: 258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_b06.g1 MSMg01no079_b06.g1 CHROMAT_FILE:
MSMg01no079_b06.g1 PHD_FILE: MSMg01no079_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:36 2005
(636 letters)
>mm_chr7_122142438_122143473
Length = 1036
Score = 1112 bits (575), Expect = 0.0
Identities = 607/619 (98%), Gaps = 3/619 (0%)
Strand = Plus / Minus
Query: 20 acacctctgcagtgcacacagacctagtccttaagttaatgacg---tgttgtcttagtc 76
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1036 acacctctgcagtgcacacagacctagtccttaagttaatgacgtgttgttgtcttagtc 977
Query: 77 tctaaatacttcttaagtcattaaaaaggagcccactccacagcggataatctattttac 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 tctaaatacttcttaagtcattaaaaaggagcccactccacagcggataatctattttac 917
Query: 137 tcaagtccactgattaaatgttaatctcacccacaaaaacaacttcacagagacaattag 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 tcaagtccactgattaaatgttaatctcacccacaaaaacaacttcacagagacaattag 857
Query: 197 actggtatttgatatgatgtctgcattcctgggcaggttttcatgcaaaattcagtttac 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 actggtatttgatatgatgtctgcattcctgggcaggttttcatgcaaaattcagtttac 797
Query: 257 attataaaattaggcatcatttattatcatgtaaagatgtcctaatattcagctaaccat 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 attataaaattaggcatcatttattatcatgtaaagatgtcctaatattcagctaaccat 737
Query: 317 agttatagcatattatatcggatggttagggagatcatgaagtacacaagtatagatagt 376
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 agttatagcatattatattggatggttagggagatcatgaagtacacaagtatagatagt 677
Query: 377 ggtgaggcttagaaagaaagaagctaagctccacttctgtacaacgaagggaatattgag 436
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 676 ggtgaggcttagaaagaaagaagctaagctccacttctgtataacgaagggaatattgag 617
Query: 437 ccataaggacagagccaacgatccaagaataaaccatgcagccatggattctagagaagg 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ccataaggacagagccaacgatccaagaataaaccatgcagccatggattctagagaagg 557
Query: 497 ggaatgtttgcttcccaaaaaggccttagagtagaaagctaataaaatgatgtttcatat 556
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ggaatgtttgcttcccaaaagggccttagagtagaaagctaataaaatgatgtttcatat 497
Query: 557 aatacacagggtgggcacatgttaatttttaaatttttaaaacatgtatataatataaat 616
|||||||| |||||||||||||||||||||||||||| |||| |||||| ||||||||||
Sbjct: 496 aatacacaaggtgggcacatgttaatttttaaattttaaaaaaatgtatgtaatataaat 437
Query: 617 cacatacatgtgtaatata 635
|| |||||||| |||||||
Sbjct: 436 catatacatgtataatata 418
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
