Query= MSMg01no079_b11.b1 MSMg01no079_b11.b1 CHROMAT_FILE:
MSMg01no079_b11.b1 PHD_FILE: MSMg01no079_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:37 2005
(618 letters)
>mm_chr7_108664274_108665292
Length = 1019
Score = 1083 bits (560), Expect = 0.0
Identities = 593/614 (96%), Gaps = 18/614 (2%)
Strand = Plus / Plus
Query: 6 gaattctcaacaccgtccaacgctggttggaatgc-aaatggcggagccaaagcacggct 64
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 206 gaattctcaacaccgtccaacgctggttggaatgcaaaatggcggagccaaagcacggct 265
Query: 65 gcgcgcatcctgcacagtttgcggtacgcgccagcttcctgcgcgcacagagtatctgat 124
||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 266 gcgcgcatcctgcacagtttgcggtacgcgccagcttcctgcgcgcaca--------gat 317
Query: 125 ggagagactagctagccgcatggcaccaaagaggattcataggccacagtgtttgctgat 184
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggagagactagctagccgcacggcaccaaagaggattcataggccacagtgtttgctgat 377
Query: 185 cacaaaataataaatgaaatgttaataggtatgataatgaaaatgaaatactacatttct 244
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 378 cacaaaataataaatgaaatgttaataggtatgataatcaaaatgaaatactacatttct 437
Query: 245 gtaggtttgggagctaaatgccatgttattaagtctcttgtcagttaagaaaaagtattc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gtaggtttgggagctaaatgccatgttattaagtctcttgtcagttaagaaaaagtattc 497
Query: 305 cttatttttattctttttactttaaggttgttagaattagatggtgaaaaccctttacca 364
||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cttatttttat---------tgtaaggttgttagaattagatggtgaaaaccctttacca 548
Query: 365 catcacaatatggccgaagcagtacttagtgaaatttacatctttaaggtcatttattag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 catcacaatatggccgaagcagtacttagtgaaatttacatctttaaggtcatttattag 608
Query: 425 aaaagagaactaatttttaaagatgagtgaaataagcgagctaagcattcgactccaaag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aaaagagaactaatttttaaagatgagtgaaataagcgagctaagcattcgactccaaag 668
Query: 485 gctgagactaaaggagacaaggaaacacggggcagagacgtcagtgacagcgaagactgg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gctgagactaaaggagacaaggaaacacggggcagagacgtcagtgacagcgaagactgg 728
Query: 545 caaagccatcagcttggtccttagaaaaaattagtaagactgatatttcgtaaaaacact 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 caaagccatcagcttggtccttagaaaaaattagtaagactgatatttcgtaaaaacact 788
Query: 605 caagaaggaggggg 618
||||||||||||||
Sbjct: 789 caagaaggaggggg 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1019
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1009
Effective search space: 613472
Effective search space used: 613472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_b11.g1 MSMg01no079_b11.g1 CHROMAT_FILE:
MSMg01no079_b11.g1 PHD_FILE: MSMg01no079_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:37 2005
(459 letters)
>mm_chr7_108830169_108831030
Length = 862
Score = 855 bits (442), Expect = 0.0
Identities = 455/460 (98%), Gaps = 3/460 (0%)
Strand = Plus / Minus
Query: 3 tatcttcttctgacctccagaagaaacacacacacacacacacacacacacacacaggca 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tatcttcttctgacctccagaagaaacacacacacacacacacacacacacacacaggca 659
Query: 63 aaacaatcacat-ataaagataaataagcctaaattatt--aaaaaaatacatatagcac 119
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 658 aaacaatcacataataaagataaataagcctaaattattaaaaaaaaatacatatagcac 599
Query: 120 caaaataaaaactgagaaatagattcccagcagacctgacccagtaagacatctaaaagg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 caaaataaaaactgagaaatagattcccagcagacctgacccagtaagacatctaaaagg 539
Query: 180 gtaattccttcggcttgggtgcttgcaggaaggaagaagtcctaggcaggcagatgcaca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gtaattccttcggcttgggtgcttgcaggaaggaagaagtcctaggcaggcagatgcaca 479
Query: 240 tttaagtcatttatgactagctcttctcagggaaagaaagaagacaccacctcacttttc 299
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tttaagtcatttaggactagctcttctcagggaaagaaagaagacaccacctcacttttc 419
Query: 300 ttcctttttctttatgaccaatcaatacaaagcggccagcgaacttcaatcaagcattgt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttcctttttctttatgaccaatcaatacaaagcggccagcgaacttcaatcaagcattgt 359
Query: 360 tccaactgatttccggatcttttgcaggaactggccctcagctgcaaccggggaggggct 419
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 358 tccaactgatttccggatcttttgcaggaactggccctcagctgcaaccagggaggggct 299
Query: 420 gaagagtggggagctctgtcccacctgcatcagaggcctg 459
||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gaagagtggggagctctgtcccacctgcatcagaggcctg 259
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 862
Length adjustment: 10
Effective length of query: 449
Effective length of database: 852
Effective search space: 382548
Effective search space used: 382548
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
