BAC Information

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BAC

Clone NameMSMg01-079I12
Chromosome7 (Build37)
Map Location 151,016,283 - 151,016,857
singlet/doubletsinglet
Overlap geneDhcr7
Upstream geneEG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1, Cdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1
Downstream geneGm498, Shank2, Cttn, Ppfia1, Fadd, Tmem16a, LOC669079, LOC677315
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079I12.T7 (MSMg01no079_i12.b1)MSMg01-079I12.TJ (MSMg01no079_i12.g1)
ACCAG300589AG300590
length706714
length of high quality
(start - end)
583 (39 - 621)218 (68 - 285)
definitionCHROMAT_FILE: MSMg01no079_i12.b1 PHD_FILE: MSMg01no079_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:11 2005CHROMAT_FILE: MSMg01no079_i12.g1 PHD_FILE: MSMg01no079_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
CCTTTGCAAACCATCTCGATCTTTAAGGGCACAAGGGGACTCTCCACAAG
CTGGGGAGGCCAGGTATGCCTAGATCGTCCCGTGATCCTTATGCCAGTGG
GCAATCCATCTATCTCCTGAGAGAATAATAGAATCATTCAAATCCAATTA
AGAGATTCTCCAGGTTGTATATGCTCTGGGATAGGAGAATGGGTCAAGGG
GTGAGTTTATACTTGCCCCTCTACATTCTAGCATTCGAAGGTACCCCAGG
GAGCTGGATCCTTATCTCACAGGAGATGGTTGCCTCCACCTCCATACCTC
ATCACAGGTGCACCTGACCATCTGGGCAAAGCATCCCCCCTCCTACTCGG
CCTTCAGGCCCCCTCCCTCAGCACACATCTCCCCAAACCAGAACACATAG
ATCTCTCTCCTGTGCACACGCCTCTAAATCTGCACATCTGTTTGACAATC
TACCTAAAACCTGTGCAAACACACATACCCTCATCTACATACACATCTCC
TGCCGCCCCCGCAATTGCACAAACTGCCTCCTTCCTGAATACTCACTCTC
TTCTTTTATACATACGGTTCATTCTTCTGCACTCTCGACGCTCCCCCCCC
CCCCCCCACAAAAACACATCTGTGCGCACCGTCCTTCTCCTGGACTCTGT
GCTGGT
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGTTAATGGCCATCTTTAGCTATGTAGTAAGTT
TGAGACCAATCTGGGCTACCTGGGGCCCTATCTCAAGAAAAAGAAAAAAA
GAAAATAATTTTTTAAAAAGGGCCAAATGGTCTACAAAATGAACTTAGTC
ACAGGAAATAGTTTTTTGTTTGTTTGTTTTTGTTTTTGTTTTTGTTTTTT
TTTTGTTTTTTTTTTGTTTGCTTTTTGCTTTTGAGGCATTGTCCAGTTAG
CCTTGACTGTTTTGTATCTGGACACGCAGACTATTCTGTCCTTATATTCA
TCGACCTGCCTTTGTTTCTTGAGCGCTATATTCTTTGGTTCCATATCTGT
TTTTTCCCCCCCTTTCTCTCTCTGTTCCTTTCTGTTTTTTGCAGCCCATC
CTTGTCGCCCTTATGTCTATTCCCTTTCCCTTCGCTCTCCCATTTCCCCT
TTATTTTTTCTTTTTATTACCCTATATCCTTTCTCTTTGTTCATACTCAT
TTTGTTCTGTTATTATCCCCTCCCTCTATTTTGTTCTCCATATCCTCCCT
TCTAACCCTTCCTCTACTCACACCCGCTTTTCCCCTTTTTGTTTCTTTTC
CCCGCTTTTTTTCGCCTCTGCTTTTCTTTTTCCCCCTTTTCTTCCCCTTC
TTTCTTCCTCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_i12.b1 MSMg01no079_i12.b1 CHROMAT_FILE:
MSMg01no079_i12.b1 PHD_FILE: MSMg01no079_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:11 2005
         (583 letters)



>mm_chr7_151016079_151017060
          Length = 982

 Score = 1067 bits (552), Expect = 0.0
 Identities = 570/576 (98%), Gaps = 1/576 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcctttgcaaaccatctcgatctttaagggcacaaggggactctccacaagct 64
           |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 779 gaattcttcctttgaaaaccatctcgatctttaagggcac-aggggactctccacaacct 721

                                                                       
Query: 65  ggggaggccaggtatgcctagatcgtcccgtgatccttatgccagtgggcaatccatcta 124
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 720 ggggaggccaggtatgcctagatcgtcctgtgatccttatgccagtgggcaatccatcta 661

                                                                       
Query: 125 tctcctgagagaataatagaatcattcaaatccaattaagagattctccaggttgtatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tctcctgagagaataatagaatcattcaaatccaattaagagattctccaggttgtatat 601

                                                                       
Query: 185 gctctgggataggagaatgggtcaaggggtgagtttatacttgcccctctacattctagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gctctgggataggagaatgggtcaaggggtgagtttatacttgcccctctacattctagc 541

                                                                       
Query: 245 attcgaaggtaccccagggagctggatccttatctcacaggagatggttgcctccacctc 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 540 attcgaaggtaccccagggagctggatcctcatctcacaggagatggttgcctccacctc 481

                                                                       
Query: 305 catacctcatcacaggtgcacctgaccatctgggcaaagcatcccccctcctactcggcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 catacctcatcacaggtgcacctgaccatctgggcaaagcatcccccctcctactcggcc 421

                                                                       
Query: 365 ttcaggccccctccctcagcacacatctccccaaaccagaacacatagatctctctcctg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ttcaggccccctccctcagcacacatctccccaaaccagaacacatagatctctctcctg 361

                                                                       
Query: 425 tgcacacgcctctaaatctgcacatctgtttgacaatctacctaaaacctgtgcaaacac 484
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 360 tgcacacgcctctaaatctgcacatctgttcgacaatctacctaaaacctgtgcaaacac 301

                                                                       
Query: 485 acataccctcatctacatacacatctcctgccgcccccgcaattgcacaaactgcctcct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 acataccctcatctacatacacatctcctgccgcccccgcaattgcacaaactgcctcct 241

                                               
Query: 545 tcctgaatactcactctcttcttttatacatacggt 580
           ||||||||||||||||||||||||||||||||||||
Sbjct: 240 tcctgaatactcactctcttcttttatacatacggt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 982
Length adjustment: 10
Effective length of query: 573
Effective length of database: 972
Effective search space:   556956
Effective search space used:   556956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)