BAC Information

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BAC

Clone NameMSMg01-079J07
Chromosome7 (Build37)
Map Location 13,960,531 - 13,960,776
singlet/doubletsinglet
Overlap geneLOC666225
Upstream geneZfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c
Downstream geneCabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627, EG434121, EG629203, LOC677512, EG629219, EG434123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079J07.T7 (MSMg01no079_j07.b1)MSMg01-079J07.TJ (MSMg01no079_j07.g1)
ACCAG300627AG300628
length708706
length of high quality
(start - end)
561 (41 - 601)249 (71 - 319)
definitionCHROMAT_FILE: MSMg01no079_j07.b1 PHD_FILE: MSMg01no079_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:15 2005CHROMAT_FILE: MSMg01no079_j07.g1 PHD_FILE: MSMg01no079_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:15 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTTCTTTATGTCCTCTACCATCATCATGAGATATGCTTTTAAATCCAGGT
CTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGGGCGAAGTGGGCGTT
CTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAGGATTCTT
ACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTTATAGTTG
TCTTTGTTAAGAGATTGTTCCTCTGTTGATTTTGTTACCCTCTATCAGCA
GGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTCAGTGGTCAGAGCAGTCT
CTGTAGGCAAGCTCTCCTCTTTCAGGGAAGGTGTACAGTTATCTGGTGTT
TGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAAACAGGATCTTTCCCAG
AAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGTTGTCTGGAGTCGAAGA
TGTCGCCGCCTGAGAAGCTCTGTGGCTCTTGTCCGGAAGGAGGCCGGCCG
TCTGGAGCTGAGGATGGCGCTGCCTCAGAAGCTCTGTGGCTCTTGCCGGG
AAAGTGGCTGGTTGTCTGGAGCTGAAGATGGCGTCGTCCAGAAGCTCTGC
GATTCTCGCCCGTCCCAGAAACGGCTGGTCACTCTGTTTTCCACCCGGCC
ACCCGTGA
TTAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTTCAGAAATACCATCTGATCCCTTACTTACCTCTCAGGAAAG
TCAAGTCTCTCTCAGGCTTACGTCTAACTAGTTTTCCATTCTCAAATCTG
CTTCCAAACTCTGTGATGGGGACATAAGCCCCAAGTGCAAGGTAGCCAGC
ATGATGAGGAGTGAATTCAAACCAGGAATCTGGAGAGGCAAAATGAGGGT
AAACTACATGCTCTGAGCCTGAAACAGCAGATGCTTAGCATGGGGGAATC
CATAGAGTATGGAATGCTTAATAGTAACTACCACATAGAGAGCTGTCTAA
TCTCAAATTAATTGGCGATTCTTCTCAATATGTCTAAAAGCCTATTCAAG
TGGAAATGTGTCATTATTTCAAAAGAACCCTGTTATCATTACTGCCCCAA
TCTTAAGCCCCTTTTCCTCCAATTCATAACAGCTGCAACTCTAGAATGTG
GAATGACGACGACTCTAGAAACACTATAATATGAGGATTACCTGGGGCAC
TGTTGAATGGATGAACTATTTATTGTAAGAAGAAAAATCACATGACCATG
TTTGCTCTAGAAACTTCTATCAGGTAGCTGTGGAAGAAGCAGATGACATG
GTACCGGTTAATCTATGAGGAAGTAATTAAAGAATCCTCAAGAGAGATGC
TGGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_j07.g1 MSMg01no079_j07.g1 CHROMAT_FILE:
MSMg01no079_j07.g1 PHD_FILE: MSMg01no079_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:15 2005
         (249 letters)



>mm_chr7_13960331_13960978
          Length = 648

 Score =  462 bits (239), Expect = e-135
 Identities = 245/247 (99%), Gaps = 1/247 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctgatcccttacttacctctcaggaaagtcaagtctctctcaggcttacgtctaacta 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 446 atctgatcccttacttacctctcaggaaagtcaagtctctctcaggcttaggtctaacta 387

                                                                       
Query: 61  gttttccattctcaaatctgcttccaaactctgtgatggggacataagccccaagtgcaa 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 386 gttttccattctcaaatctgcttccaaactctgtgat-gggacataagccccaagtgcaa 328

                                                                       
Query: 121 ggtagccagcatgatgaggagtgaattcaaaccaggaatctggagaggcaaaatgagggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ggtagccagcatgatgaggagtgaattcaaaccaggaatctggagaggcaaaatgagggt 268

                                                                       
Query: 181 aaactacatgctctgagcctgaaacagcagatgcttagcatgggggaatccatagagtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaactacatgctctgagcctgaaacagcagatgcttagcatgggggaatccatagagtat 208

                  
Query: 241 ggaatgc 247
           |||||||
Sbjct: 207 ggaatgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 648
Length adjustment: 9
Effective length of query: 240
Effective length of database: 639
Effective search space:   153360
Effective search space used:   153360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)