BAC Information

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BAC

Clone NameMSMg01-080D11
Chromosome7 (Build37)
Map Location 144,453,549 - 144,453,803
singlet/doubletsinglet
Overlap geneEbf3
Upstream geneLOC546009, EG621677, EG668771, Mgmt, EG621804
Downstream gene9430038I01Rik, Txnl2, LOC435235, Tcerg1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080D11.T7 (MSMg01no080_d11.b1)MSMg01-080D11.TJ (MSMg01no080_d11.g1)
ACCAG301112AG301113
length694695
length of high quality
(start - end)
257 (44 - 300)260 (72 - 331)
definitionCHROMAT_FILE: MSMg01no080_d11.b1 PHD_FILE: MSMg01no080_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:03 2005CHROMAT_FILE: MSMg01no080_d11.g1 PHD_FILE: MSMg01no080_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTCTTCCAAAAATAGGTTCTTTGAGTTGAGGTACACTGGACTCTTG
CTCCTACCCCATCACTCAGGGATTCACCTTGCTTGTCATTCTTAGACTTG
GGGCTGGAGACCTCAGGCGGAGTGCAGCTCTGTCTTAGTTTTGATGGCTT
CCAGAGGGCCCCTCACATGCATTATCCAACATGGCGGCCCCAAGCCACAG
GTAGCACTTGAGACATGAAAGGTGGCTAGTCCCAATGGACACTGGTTATG
ACTGCCCTTTACTTGACAAATTGCAAAACTCAACAAACAAGACAAAGCTA
ACATACACATCTCAATAGATTTTTTAAATTTTAGCTTCAATATTAATATA
CTATTCGCCCCACATGATGTTAACTTATCATATTTTTAAAACGTAGTACA
CTTGTTTCTGTTTATTTTCTGAATGCAACTGCATCTATCGTTTGTATTGA
CACTTATCCTCTCCCTCCATTGGCCAGCGTCAGGTTGGAGAGTGTTCAGC
GCGCCCCCCTGGCCAGCCCTTGTACGGACCACGACTTCCCCGCGCATAAC
CACTGTGGCTGAACCCTCCTACTACCTCACAGTATGATGGTCCCACCCCT
CCTGCCGGCCTACACCCGATCTTACCCGCTCCGCCGATATCCCA
TGATAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCTGGAGTTTTAGGCAATTGTGAGTCAGG
TGGCATAGGTTCGGGGAACTGAACACATGCACTCTGCTAGAGCAATAGAT
GCTCGTAACCAATAAACCATCTCTCCAGGCCATGGTTTTTGTTTGTTTGT
TTTGTTTTGAAACAATGTCTTTCTACGTAACCCTGGTTGGATTGAACTCT
CTATGCAGACCAAGCTGGCCTGGAACTCACAGAGATCTGCCTGTCTCTGC
ATCCCAAATGTTGTAATTAAAGGTGTATACACCAACAAACCTAGCCCTGT
TTTGTTTTGTTTTAAAGATTTATTTATTTTTATTTATATAAGTACACTGC
AGCTGCCTCTAGACACTCACCAAATAAATGCATTGTACTCCATTACAGAT
GCGTTGTGAGTTACCATCTGGTTGCTGTGAATTGAATTCAGCTCCTCTAT
ATTACCATTCTGTGCTTTTAACTGCTTGACACATATCTCCCGTCCCGTTT
TTGTTTTTATAAATTTTCTTAGTATCCCACACTCAACTCCCCCTCACCAT
GACGATTACTTTTTACCCCTGATTCTTCCCCCCCCTTCTACCTTCCCTGC
CTTTAACATCCTGTTTTGTTCCCTCTACAACTCTCCCCTTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_d11.b1 MSMg01no080_d11.b1 CHROMAT_FILE:
MSMg01no080_d11.b1 PHD_FILE: MSMg01no080_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:03 2005
         (257 letters)



>mm_chr7_144453345_144454003
          Length = 659

 Score =  455 bits (235), Expect = e-132
 Identities = 250/257 (97%), Gaps = 6/257 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactcttc---caaaaataggttctttgagttgaggt-acactggactcttgctc 60
           ||||||||||  |   |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattcactc--cacacaaaaataggttctttgagttgaggttacactggactcttgctc 262

                                                                       
Query: 61  ctaccccatcactcagggattcaccttgcttgtcattcttagacttggggctggagacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctaccccatcactcagggattcaccttgcttgtcattcttagacttggggctggagacct 322

                                                                       
Query: 121 caggcggagtgcagctctgtcttagttttgatggcttccagagggcccctcacatgcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 caggcggagtgcagctctgtcttagttttgatggcttccagagggcccctcacatgcatt 382

                                                                       
Query: 181 atccaacatggcggccccaagccacaggtagcacttgagacatgaaaggtggctagtccc 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 attcaacatggcggccccaagccacaggtagcacttgagacatgaaaggtggctagtccc 442

                            
Query: 241 aatggacactggttatg 257
           |||||||||||||||||
Sbjct: 443 aatggacactggttatg 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 659
Length adjustment: 9
Effective length of query: 248
Effective length of database: 650
Effective search space:   161200
Effective search space used:   161200
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)