Query= MSMg01no080_h21.b1 MSMg01no080_h21.b1 CHROMAT_FILE:
MSMg01no080_h21.b1 PHD_FILE: MSMg01no080_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:25 2005
(571 letters)
>mm_chr7_100467402_100468374
Length = 973
Score = 1017 bits (526), Expect = 0.0
Identities = 559/570 (98%), Gaps = 4/570 (0%)
Strand = Plus / Plus
Query: 5 ggaattcttttagtgtgcccg-attgtggaaaatttctttctccttcagttatgtatagt 63
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcttttagtgtgtttgtattgtggaaaatttctttctccttcagttatgtatagt 264
Query: 64 ttttgtttgtttattttaactttctcatttgatcagagtccagagagacatgaggtaaag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttttgtttgtttattttaactttctcatttgatcagagtccagagagacatgaggtaaag 324
Query: 124 atattagatccactctataaattatcatttcacagtgctgagaccttttgttcagaaatt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atattagatccactctataaattatcatttcacagtgctgagaccttttgttcagaaatt 384
Query: 184 tcatagggctagcataaatacctgctaagaagttaacatatgctgaaatgaattgtgctc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcatagggctagcataaatacctgctaagaagttaacatatgctgaaatgaattgtgctc 444
Query: 244 agtgggtatatagctttataagtcataattgtatactcatgtgttcttagaaaaaatt-g 302
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 445 agtgggtatatagctttataagccataattgtatactcatgtgttcttagaaaaaatttg 504
Query: 303 tactatagtatttttctgttttcattagtataatagaagatgactattattttcttatag 362
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 505 tactatagtatttttctgttttcattagtataatagaaaatgactattattttcttatag 564
Query: 363 cagacaaaagcgaattttctatattaatgatatcaactgtagagatgacatatttcattg 422
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagacaaaagtgaattttctatattaatgatatcaactgtagagatgacatatttcattg 624
Query: 423 aaaggcattggacatagggcacagaacattagggttataataagatagaaccatgtttta 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaggcattggacatagggcacagaacattagggttataataagatagaaccatgtttta 684
Query: 483 tc-tcttctctcatgggttacctatgggtagaaagcaaaccttttgagagccttagaagt 541
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 685 -catcttctctcatgggttacctatgggtagaaagcaaaccttttgagagtcttagaagt 743
Query: 542 tttttgtgaaattaagtcttaatatctaca 571
||||||||||||||||||||||||||||||
Sbjct: 744 tttttgtgaaattaagtcttaatatctaca 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 973
Length adjustment: 10
Effective length of query: 561
Effective length of database: 963
Effective search space: 540243
Effective search space used: 540243
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_h21.g1 MSMg01no080_h21.g1 CHROMAT_FILE:
MSMg01no080_h21.g1 PHD_FILE: MSMg01no080_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:25 2005
(591 letters)
>mm_chr7_100614937_100615927
Length = 991
Score = 1065 bits (551), Expect = 0.0
Identities = 581/591 (98%)
Strand = Plus / Minus
Query: 1 attcttgattcattcccccttcagatctcaagctgttcaactatatgagatctagcagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 791 attcttgattcattcccccttcagatctcaagctgttcaactatatgagatttagcagac 732
Query: 61 taccctcctgatagttcctaagaaagaaacacagagaccctacgcatgctacttagtttc 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 731 taccctcctgatagttcctaagaaagaaacacagagactctacgcatgctacttagtttc 672
Query: 121 tcctgatccctgcttaatatcttttgcatctgcgaaggcgtatgttcctgtcattacctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tcctgatccctgcttaatatcttttgcatctgcgaaggcgtatgttcctgtcattacctg 612
Query: 181 tatcttattatccaagatcattctttggagcatcttggtgtttatgtgccaggagaattc 240
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 611 tatcttattatccaagatcattctttgaagcatcttggtgcttatgtgccaggagaattc 552
Query: 241 tttaagacatgatatattaattgatgtcagccctgttatgcttgtgttgacttctaaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tttaagacatgatatattaattgatgtcagccctgttatgcttgtgttgacttctaaata 492
Query: 301 acatcatttatattatttgagaattcaagggcagaaataaagtacattttcttctacctg 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 491 acatcatttatattatttgagaattcaagggcagaaataaagtacactttcttctacctg 432
Query: 361 gttttatttattgtaaaataaaagattatatgaagatatgatttttcaggtagggtaagt 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 attttatttattgtaaaataaaagattatatgaagatatgatttttcaggtagggtaagt 372
Query: 421 tgaccagtctccctctgttccaacttaatcccaaggaaggctctgaggacacacagcaca 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 371 tgaccagtctccctctgttccaacttaatcccaaggaaggctctcaggacacacagcaca 312
Query: 481 tcacaccctgacttctactgtggctgttgtactaaacctttcatcctgttctccattttc 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tcacaccctgacttctactgcggctgttgtactaaacctttcatcctgttctccattttc 252
Query: 541 atattttcagtctttttgtttaacttttctgtatgtgacactgtttcttgg 591
||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 251 atattttcagtctttttatttaatttttctgtatgtgacactgtttcttgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
