BAC Information

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BAC

Clone NameMSMg01-080K15
Chromosome7 (Build37)
Map Location 6,645,353 - 6,645,960
singlet/doubletsinglet
Overlap geneZim1
Upstream geneLOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2
Downstream genePeg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080K15.T7 (MSMg01no080_k15.b1)MSMg01-080K15.TJ (MSMg01no080_k15.g1)
ACCAG301447AG301448
length709699
length of high quality
(start - end)
555 (39 - 593)447 (67 - 513)
definitionCHROMAT_FILE: MSMg01no080_k15.b1 PHD_FILE: MSMg01no080_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:38 2005CHROMAT_FILE: MSMg01no080_k15.g1 PHD_FILE: MSMg01no080_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCC
AAGGCTCCTAAAAGGGTGGGGCGGCTCCCTTCAGTTTTCCCAGCATTTCA
AGAGTGAGATGAAAAACAGTGCCCACAAGGCAGCTAGCCTAGGATACACA
GCGCAGCATCGAGCAAAAGAGACTGTCTCAAAAACAAGATTCCAACCTGC
ACATGAGTGCCGTAAAATGTGCATGTCCTCACATGCACACTTGCACACAC
ACACACGTGTACTCGTGTGTGTGTGTGCATGCGCGCGTGCATACAATCAA
AACAAATAACTATTTTCAAAACTATTAAATATGAGGATTCAAGGACTGGT
AAAGTACACCTACTGTTCTTGCAGAGGCCCTGGGTGTGGTTCTCAGAATC
CTCATCGGACGGCTCACAAATGCCTGTAACTCCAATTCTAAGAGGATCTG
ACAGCTATGAGCACTTTAACTATATATAGTCCAGACCTCCCCCTCGCATA
CACAGACACAGCATGTAACAGTTAAAAATGAATGCTTTTTAAAAATAAGA
ATATCTAATGTTCCATGAACATCAAGTAATCGAACCGTGCTCAGGATGGA
GTATGAGCTCTTGCGCACTGGTTTCGATTTTAGCGCTATCAGAGCTTTAG
GGTTTCTTCCTTCAAGCTGGCCCCAGATTCCCTCCCACCATGCCCCTAGC
ACCAAGGTA
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACCCTAAATCTGGATGGCTCCTTCTAATGGCCAT
CCAATGACAAGGACATGAAGGAAGGGATCTTTGCTTTTTGCCTTCTTACC
CTCACTCTCCGCAGAAAGAATTGTTGTGGCATTCCTTTATCAACAACTCT
TGAGATCTCATTATAGACTGAAGGCAAGCAGCTCTTCAGGAGTCCTCTAG
ACCAACAATTCTCAACCTGTGGGTCACAACCCTTTTGGGAGTTAAACAAC
TCTCCCATGGGGTTCCCTAAGACCCCTAAGAAACACAGATGCTTACATTT
TGATTCATAACAATCACAAAATTAGAGTTATGAAGCAGCAATGGAAATAA
TTCTATGCCCGAGAATCACCACAACACGAGGAGCTGTGTTAAAGGGTGGC
AGCATTAGGACGGCTGAGAAAGCTCAGCATGGTTTGCATCTCACAGAGCT
GCAGGATGTATGGTCAGCTGGATAGGTTGGTGAATCTCCTCTCTTCAACA
ACTCTTACCGTTTATAACATCTTGTTGAGTTGAAGCTGTCGGAGCTTCAC
CACCCTTGCAGCTTAGTTATTTCCTGCCACCTGTAACCTGCCTGTTTTTT
TACCCCTTAAGCACTTCTCTTGACATTCTTCTGTCCGCTTACCGCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_k15.b1 MSMg01no080_k15.b1 CHROMAT_FILE:
MSMg01no080_k15.b1 PHD_FILE: MSMg01no080_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:38 2005
         (555 letters)



>mm_chr7_6645209_6646163
          Length = 955

 Score =  874 bits (452), Expect = 0.0
 Identities = 541/610 (88%), Gaps = 64/610 (10%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcc-caaggctcctaaaagggtggggcggctcccttcagttttcccagcatttcaa 63
           ||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 gaattccacaaggctggtaaaagggtggggcggctcccttcagttttcccagcatttcaa 204

                                                                       
Query: 64  gagtgagatgaaaaacagt-----------------------------------gcccac 88
           |||||||||||||||||||                                   ||||||
Sbjct: 205 gagtgagatgaaaaacagtgtcaggaacagcccccttcccccccccccccagaggcccac 264

                                                                       
Query: 89  aaggcagctagcctaggatacacagcgcagcatcgagcaaaagagactgtctcaaaaaca 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaggcagctagcctaggatacacagcgcagcatcgagcaaaagagactgtctcaaaaaca 324

                                                                       
Query: 149 agattccaacctgcacatgagtgccgtaaaatgtgcatgtcctcacatgcacacttgca- 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 325 agattccaacctgcacatgagtgccgtaaaatgtgcatgtcctcacatgcacacttgcac 384

                                                                       
Query: 208 -cacacacacacgtgtactc------------------------gtgtgtgtgtgtgcat 242
            | |||||||||||||||||                        |||||||||||||  |
Sbjct: 385 gcgcacacacacgtgtactcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg--t 442

                                                                       
Query: 243 gcgcgcgtgcatacaatcaaaacaaataactattttcaaaactattaaatatgaggattc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gcgcgcgtgcatacaatcaaaacaaataactattttcaaaactattaaatatgaggattc 502

                                                                       
Query: 303 aaggactggtaaagtacacctactgttcttgcagaggccctgggtgtggttctcagaatc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaggactggtaaagtacacctactgttcttgcagaggccctgggtgtggttctcagaatc 562

                                                                       
Query: 363 ctcatcggacggctcacaaatgcctgtaactccaattctaagaggatctgacagctatga 422
           ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctcatcggatggctcacaactgcctgtaactccaattctaagaggatctgacagctatga 622

                                                                       
Query: 423 gcactttaactatatatagtccagacctccccctcgcatacacagacacagcatgtaaca 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gcactttaactatatatagtccagacctccccctcgcatacacagacacagcatgtaaca 682

                                                                       
Query: 483 gttaaaaatgaatgctttttaaaaataagaatatctaatgttccatgaacatcaagtaat 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gttaaaaatgaatgctttttaaaaataagaatatctaatgttccatgaacatcaagtaat 742

                     
Query: 543 cgaaccgtgc 552
           ||||||||||
Sbjct: 743 cgaaccgtgc 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)