BAC Information

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BAC

Clone NameMSMg01-081D18
Chromosome7 (Build37)
Map Location 74,455,504 - 74,455,753
singlet/doubletsinglet
Overlap geneMef2a
Upstream geneLrrk1, Aldh1a3, Asb7, Lins2, Lass3, Adamts17, Lysmd4
Downstream geneEG665304, Lrrc28, Ttc23, Dmn, LOC665319, LOC100041771, Igf1r, C330024D12Rik, EG434197
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081D18.T7 (MSMg01no081_d18.b1)MSMg01-081D18.TJ (MSMg01no081_d18.g1)
ACCAG301884AG301885
length733722
length of high quality
(start - end)
250 (67 - 316)147 (73 - 219)
definitionCHROMAT_FILE: MSMg01no081_d18.b1 PHD_FILE: MSMg01no081_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:22 2005CHROMAT_FILE: MSMg01no081_d18.g1 PHD_FILE: MSMg01no081_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXCTATTTCCAGAGGATCCGCGGAA
TTCATTAAGGTACCACACACACAAACTCACACTTTTGATAACATAAAAAC
ATGAAAAGAAAAAACAACTTAATTCAGATTAAAATTAGTTACTATTGCTT
GTCTACTACTCTACAAGAATGGGCTAAATGGAAAGGTTAATTCCAAGAAC
TAGTACAGACTTGAAGTAGCTAGAATCACACTGCTAGCTAAATATAAATT
AGGCACAAACACGTTAGAAAGCTCTTGTCAAATCAGGTAACTACAGAGGT
TAAGTACTTCGGGTAAGGGACCAGTGTGGAGGAGGAGACCTCTCAAGGAA
GGGGAAAAAGAACAGTCTCAAGAACAGATCAAGAGGATACTAGAATAGCT
TTGGGGGGGGGGCTAAAGGAGGAAATATGGGGAGGCCTCCTCTCCCCTTC
CTCCTCCTCTCTATTTTTTTCCTCTCTCTCTCCCTCTTCTCTTCTCCTCC
TCTTTTCCTTTTTTTTCCCATTTACCCCCTTTCTCTTATTATTTTTCTTT
TTTTTTCTTTCTCTTTATTTTAACTTTCTCTCTTTCCAGTATAATTTATT
ACTTCCCAAATTTCACCATCGCTTACTCCTCTCCTCACTATCTTTTTACT
TCTTTCTTCAGCCATCCTCTTCCTCACCACCCTCCCCCCCCCTCTCCCTA
ATCTCTCCCCCCCCCTTCTTCTATTCTCCCTCC
NCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCATGTGGAAAAAAAATATAGACTCTCTTT
CCTCTAGAAGAGGGATTGTAATTCTGCACTCCTTAAATGTGATCAATGCC
ACCTTATTACCCTTCAAGACTACTGTGTGAAAGAGAGGGGACTGAGGTAG
AAGGCGGAAGTCTGTGGTGTAGAGAGGAACCTGTAGAGAAACCCTATGCC
AGTCAGAGGAATCAACATTAGTACCAACATGCTAAGTCCTGGTGTATGCA
CTGCTGTGTGCACTGTGTATGTGATAGATGAAAATGGTGCCTTACAGGAT
GTGATCTTCTTCTCTGACGCCTTGTAAAGACTTTAATGTTTCTCTTACTG
ACGAGAAATATACCATATAACCTTCATCCAAAGGGGGAGCTGCAAAATAT
CTCACCACTACTCAAAGACAAGGAAGTTCTAATAATGTGTAACCTCTACA
ATTTCTCTATGGAGATATGAATGACAAGTGTAAAATAGCAAGATGTTCGG
ATGTTGATTTAATGTAAGACGTGCTCTTGCTGCCGTCCCAAATGTGTTCT
TGAGTTTCATTTTGTGATTCATCCTGTTGCTCCCTCTTAATAATATATGA
TCTTTTTATCCCCCTATTCTATTTTTTTATTTCTTTTATCTCAATGTTAC
ATCCTATCGCACCAATTCCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_d18.b1 MSMg01no081_d18.b1 CHROMAT_FILE:
MSMg01no081_d18.b1 PHD_FILE: MSMg01no081_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:22 2005
         (250 letters)



>mm_chr7_74455304_74455953
          Length = 650

 Score =  476 bits (246), Expect = e-139
 Identities = 249/250 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacacaaactcacacttttgataacataaaaacatgaaaagaaaaaacaacttaattca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacacaaactcacacttttgataacataaaaacatgaaaagaaaaaacaacttaattca 260

                                                                       
Query: 61  gattaaaattagttactattgcttgtctactactctacaagaatgggctaaatggaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gattaaaattagttactattgcttgtctactactctacaagaatgggctaaatggaaagg 320

                                                                       
Query: 121 ttaattccaagaactagtacagacttgaagtagctagaatcacactgctagctaaatata 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaattccaagaactagtacagacttgaagtagctagaatcacactgctagctaaatata 380

                                                                       
Query: 181 aattaggcacaaacacgttagaaagctcttgtcaaatcaggtaactacagaggttaagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattaggcacaaacacgttagaaagctcttgtcaaatcaggtaactacagaggttaagta 440

                     
Query: 241 cttcgggtaa 250
           ||||||||||
Sbjct: 441 cttcgggtaa 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)