BAC Information

Click to search

BAC

Clone NameMSMg01-081L18
Chromosome7 (Build37)
Map Location 112,707,238 - 112,707,562
singlet/doubletsinglet
Overlap geneApbb1
Upstream geneOlfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1
Downstream geneHpxn, Trim3, Arfip2, Fxc1, Dnhd1, LOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081L18.T7 (MSMg01no081_l18.b1)MSMg01-081L18.TJ (MSMg01no081_l18.g1)
ACCAG302268AG302269
length719720
length of high quality
(start - end)
392 (68 - 459)297 (73 - 369)
definitionCHROMAT_FILE: MSMg01no081_l18.b1 PHD_FILE: MSMg01no081_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:02 2005CHROMAT_FILE: MSMg01no081_l18.g1 PHD_FILE: MSMg01no081_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:02 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAAAAGGATCCGCGGA
ATTCTATCAGCCCCCCAAAGAAGACCTAATACCAATACTCTTCAAACTAT
TCCACAATATAAAAACAGAAGGAACTCTACCCAGTTCGTTCATTCTATGA
AACCATAATTATGCTTCTACCCAAATCACACAAATACCAGATAAAGAGGA
ACAATTTCCCTTATGAACACTGATGCAAAATTACTCAACAAATTTATTAG
ACATTTTCTTTATTTTCATTTCAAATGTTATCCCCTTTCTTGGTTTCCCC
TCTGAAAACTCCCTATGTTATCCACCATCCCAATGTTCACCAAACCACCC
TCTTTTTCGTCCCTATCCTGGCATTCCCCTACATTGGTGTATCAAGCCTT
CTCAGGACCAAGGGTCTCTCTTCCCATTGATGTCCAATAAGGCCATCCTC
TGCTACACATGCTGCTTCAGCCATGGATCCCTCCATGTTTACTCTTTGGT
TGATGCTTTAATCCCTGGGAGCTCTGGGGAATCTGGTTGGTCCATATTGC
TCTTCCTATGGATCTGCTATCTCCCTCATCTCCTTCAACCCTTTCTCTAG
CTCCTCCATCGGTTAATTTGTGCTTAGTACTACTTGATTGCTGATTACAT
CTGCCTCTGTAATTGTGCCGTACTGTCTAACCCTTTTGTAACAAGCTTAT
TCGCGCTCCTGTCAGTCAG
CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTTTCTCTCTCCCAGCCCCTAGGTAGG
GAACCCCAGCTACTGAGGAAGGGCAGCCCAGGGGACATGGGGTATAGGAA
GAACATCCACAGCCTCCCCCTACCTGCCCCAAACCCTTGAGTTCCCTGGG
TCCCCAAACAAGCAGGCAGAGGAAGGATGGGAGTTCTTCATGGGGTCTGG
GATCCACATCTTGCAACTGACTCCCCAGGGGGTGCTGGGAGGCAGGAGGT
GGAGGTCTGGGAGCGAACATCCAGACACTTCTGGCAGCGGGAGCATGCAT
GCAGCCTACACAGCCTCTGAGTGATTGGCAGCACTGGGCTCACACCAAAA
CATGTGACAGCAGAAGGAGGCTAGGTCGTCAGACATGTTGCATGCATACA
TGTGCACTTATTTGCCCACAGTCAGGGCGGAGAGAAACTTGCACCCGATA
CTTCCCCAGCACAGCTTCTGTCTGCTGTTGCAAGATGGCCTTTGTGTCAA
GGACCACGCTGACGCGATTTGGTAGCCACTGCTCCCGACAACTGGAAGAC
AGAACTGACTCCAGGGCCCCATTAAACATATCTACCGCTACCGTCGTATC
CGCGGGTTCGTTCCCCGGAAAATTTATTTGTATACTTCTGCAACAGCTCA
CCCGTTGGCGCTGGGAACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_l18.g1 MSMg01no081_l18.g1 CHROMAT_FILE:
MSMg01no081_l18.g1 PHD_FILE: MSMg01no081_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:02 2005
         (297 letters)



>mm_chr7_112707036_112707728
          Length = 693

 Score =  319 bits (165), Expect = 1e-91
 Identities = 256/329 (77%), Gaps = 67/329 (20%)
 Strand = Plus / Plus

                                                                       
Query: 3   tttctctctcccagcccctaggtagggaaccccagctactgaggaagggcagcccagggg 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tttctctctcccagcccctaggtagggaaccccagctactgaggaagggcagcccagggg 262

                                                                       
Query: 63  acatggggtataggaagaacatccacagcctccccctacctgccccaaacccttgagttc 122
           || |||||| ||||||||||||||||||||    ||||||||||||||||||||||||||
Sbjct: 263 acgtggggtgtaggaagaacatccacagcc----cctacctgccccaaacccttgagttc 318

                                                                       
Query: 123 cctgggtccccaaacaagcaggcagaggaaggatgggagttcttcatggggtctgggatc 182
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cctggggccccaaacaagcaggcagaggaaggatgggagttcttcatggggtctgggatc 378

                                                                       
Query: 183 c--------------------------aca------------------------------ 186
           |                          |||                              
Sbjct: 379 ccagacgtttgggcttgagggaaccccacagcgactgaacacccctgcggactgtccacc 438

                                                                       
Query: 187 -------tcttgcaactgactccccagggggtgctgggaggcaggaggtggaggtctggg 239
                  |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctacacgtcttgcaactgactccgcagggggtgctgggaggcaggaggtggaggtctggg 498

                                        
Query: 240 agcgaacatccagacacttctggcagcgg 268
           ||||| ||||||||||||||||| |||||
Sbjct: 499 agcgagcatccagacacttctggtagcgg 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 693
Length adjustment: 9
Effective length of query: 288
Effective length of database: 684
Effective search space:   196992
Effective search space used:   196992
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)