BAC Information

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BAC

Clone NameMSMg01-081P13
Chromosome7 (Build37)
Map Location 135,160,102 - 135,259,697
singlet/doubletdoublet
Overlap geneLOC436010, EG668675, Itgam
Upstream gene2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72
Downstream geneItgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081P13.T7 (MSMg01no081_p13.b1)MSMg01-081P13.TJ (MSMg01no081_p13.g1)
ACCAG302449AG302450
length727714
length of high quality
(start - end)
214 (45 - 258)119 (110 - 228)
definitionCHROMAT_FILE: MSMg01no081_p13.b1 PHD_FILE: MSMg01no081_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:20 2005CHROMAT_FILE: MSMg01no081_p13.g1 PHD_FILE: MSMg01no081_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,160,102 - 135,160,310)(135,259,580 - 135,259,697)
sequence
TTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGG
AATTCCTACCATTCCTTGTAAAGAAAATACCACTGCAAAGTTGGACAACA
GGATCATGGGAAGAAGACAGTACCCCAGGACACTTGCCACACAACCAAAT
GACACACCTGTCATACTCACTAAATTTAACAAATAAAACATTCCTAAGTA
TCCAATTGCACTGATCCCATATACGTAGCCAAACTGGATTTTCCAGCCAA
TAATAACAGCGTGTCCTCAAAGGCAAGGCATAACACCACTGACCCTGCCA
AGTCCGTCTCATTCATGATGCTGTCGTCAGCTGCCCTCATAGGGTGTAGC
ACCGTTAGCGTTTTTTTTTTGCCAAATGCCATAATTGATACCCAATTCTT
CTAATAGAGGTGGCTCCTCCTCAAATCTGTCTCCATATAATGCCTGGCTG
ATGCGTTGTTGTACGATAGTACTCATTTGACTGTGAAATCTGCCCAGTGA
ATGTCTGGTGTGAGTGCATCATGCATGTCTGGAGAGAAAAATCTTTCCTT
GGTTCTAGAATTCACAATCCCTCATAATGCTTGTCCTAATGTCCTCCAGC
CTCCTTCCTTACATTGAAGAATGTTTATAATTGTCATCTAATGTTGTGCT
CAGCTGGATAATTTGCCTTGTTAACTTATCTGATCCTGCAGTGTAGCATG
AATAATTTTTTCGCTTATCATGATTAT
ATGCAGTGTTAGGCTGGCGGCGCCTGTTCCAAACATTAGGTGAACTATAG
AATTTCCGCGAAATTCTCTTACAGACTGCAACAGAGCAGTTCTGGAAGAG
GAAGGCCAAAGAAACAGATGACTAAGACTGAGGAAGGCCATGATGACCAT
GTGTGTGTGGCCTTGAGGCTGGAGCCCCGCCATGTTCTTACCAGCACTGG
GGTCCTTTCAAGCTGATCCCGGAAATTCCAGTGAGGGGGGGATTTCTGCT
TGGTGTGACAGGCACTTGAGAGGTTCTGAGGAAAGACAGACAGAAAAGAG
AGTGCTGGGTTCTGGTCCTGCCCAGCATGTTAACAGTCTGGTCCTTAGAG
AGGGTCAGAACAGGCCATACACAGATCTTTACTAAGACCTGAACTTTGGG
GACCCGGCTGGACCCACCTGCGAGAAGACGACCTGGGGATGATCTCCTAC
GGTCACATTGTTGATCTGATCAGGTATCCCTAAGACTACACTGATAGGTA
GGCTCCTCTGCCCCACGTTGTTGATTTTTGTTTCATTGGTGTTACCGTGT
GCTCAAGCCTTGCGTCGTGTCTAGTTCTTGTAGTTGCATTCTTACTTCCT
CCTTCCCCATCACTGAATACACTCCTACCCCCCGCCTCTTCTGACAGACG
CGCCTCTGTCTCTGAACCCCACACTGCAACACTCAAACATCACTTTATGC
AATGATCCGCCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_p13.b1 MSMg01no081_p13.b1 CHROMAT_FILE:
MSMg01no081_p13.b1 PHD_FILE: MSMg01no081_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:20 2005
         (214 letters)



>mm_chr7_135159897_135160510
          Length = 614

 Score =  381 bits (197), Expect = e-110
 Identities = 206/209 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcctaccattccttgtaaagaaaataccactgcaaagttggacaacaggatcatgg 65
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcctaccataccttgtaaagaaaataccactgcaaagttggacaacaggatcatgg 265

                                                                       
Query: 66  gaagaagacagtaccccaggacacttgccacacaaccaaatgacacacctgtcatactca 125
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gaagaagataataccccaggacacttgccacacaaccaaatgacacacctgtcatactca 325

                                                                       
Query: 126 ctaaatttaacaaataaaacattcctaagtatccaattgcactgatcccatatacgtagc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctaaatttaacaaataaaacattcctaagtatccaattgcactgatcccatatacgtagc 385

                                        
Query: 186 caaactggattttccagccaataataaca 214
           |||||||||||||||||||||||||||||
Sbjct: 386 caaactggattttccagccaataataaca 414


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no081_p13.g1 MSMg01no081_p13.g1 CHROMAT_FILE:
MSMg01no081_p13.g1 PHD_FILE: MSMg01no081_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:20 2005
         (119 letters)



>mm_chr7_135259380_135259898
          Length = 519

 Score =  228 bits (118), Expect = 7e-65
 Identities = 118/118 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaacagatgactaagactgaggaaggccatgatgaccatgtgtgtgtggccttgaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agaaacagatgactaagactgaggaaggccatgatgaccatgtgtgtgtggccttgaggc 259

                                                                     
Query: 61  tggagccccgccatgttcttaccagcactggggtcctttcaagctgatcccggaaatt 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tggagccccgccatgttcttaccagcactggggtcctttcaagctgatcccggaaatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 519
Length adjustment: 8
Effective length of query: 111
Effective length of database: 511
Effective search space:    56721
Effective search space used:    56721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)