BAC Information

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BAC

Clone NameMSMg01-082F13
Chromosome7 (Build37)
Map Location 58,630,525 - 58,631,141
singlet/doubletsinglet
Overlap genenone
Upstream geneNell1, 4933405O20Rik, EG668766, EG668767, EG668768, EG638046, EG668770, EG668774, LOC668776, LOC434186, LOC546971
Downstream geneLOC668779, Tmem16e, Slc17a6, EG620599, LOC654473, LOC100040608, Gas2, 1700015G11Rik, EG668783
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082F13.T7 (MSMg01no082_f13.b1)MSMg01-082F13.TJ (MSMg01no082_f13.g1)
ACCAG302737AG302738
length709715
length of high quality
(start - end)
666 (37 - 702)613 (67 - 679)
definitionCHROMAT_FILE: MSMg01no082_f13.b1 PHD_FILE: MSMg01no082_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:47 2005CHROMAT_FILE: MSMg01no082_f13.g1 PHD_FILE: MSMg01no082_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATT
GTGTACCTGTACCACATTTTCTTTTTCCATTCTTCACTTGAGGGATATCT
AGTTTGTTTCTAGTTTCTGGCTATTAAGACAAAAGCTGCTGTGAACATAG
TTGAGCAAGTGTCTTTGTGGGATGGTGGAGCATATTGTGGGTATATTCCC
AGGTATAGTGAGGTCTTGAGGTAGAACTATTCTGAGTTTTCTGAGAAACC
ACCAAATTGATTTCCAAAGTAGTTGTATAAGTTTGCACTCCTACCAGCAA
TGGAGGAATGTTCCCCTTGCTGCACATCCTTGTTAGTATGTATTATCACT
TTAGTCTTTGATCTTAGCCACTATGAGCTGTATAAGATGGAATCCCAGAG
TGGTTTTGATTTGCATTTCCCTGATGACTAAGGACTTTGAACATTTCCTT
AAGTGCTTCTCAGCCATTCTGAAATTCATCTGTTGTGAATTTTTTGTTTA
GGTCTGTTTGCCAATTTTTATTTTTTATTTTACTTTTTATTTATTCTTTA
ATTCTTTTTCTAACAGTCTAGTCTTCATCACTCTCCTAGACTGCCACCCA
CCATCTGTCTCAAGAGCATGTCCCCCACCCCCCATCCACCCCACCATACC
TTCCCACTTTCTAGGGCCTCAAGTCTCTCAGTGGCTAGGTGTATCTTCTC
TCACTGTGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCTGCCTGAAGAACAGCAATTACAGGTGTATAG
TTCGAAATGTGTTTTATTTATTAAAAAAAAACTGCCTGTGCAGGTAGAAT
ATGACACTTGTGTTGTGACAAAAGTAATTCCACTTAAGGACTGATAATCT
GAATATAGATTGTTAAAATACGACAAAGGTTGAGATAATAATTGCAATAA
AAGATAATTAAAGTTATGTTTTTGAAGTCTTTCACTTTCAACCAAATGAC
AAACTAAGAATCAGCGTGAGGATGCTGTTTCAGTTACCAGTGTAGAGTCA
GACTCAACACAAGTCAGGATCTGTCACATTGGCGGTTATTTCTCACCTGC
AGATGGTGAATTATCCCACAGCTCACTTCACATTCCAGGGTCTTCTGTTA
TCTGAAGTGTGCCTTCTTCTCTTGAATAAAGAAGTGATCCATCCAAAGGA
GAAAGTCTTGTGATGATGAAAATGTAGCCCAATTATCATCTGTCTTGGGA
ATCTGTTTATTTAAAACCCAACATTCCTTACTTAAATCATTTTAAACTTA
TTCTTCTTATGAAAGGTCATTTCTCCAAGTGTTTCAAATTAGGGTAAATA
ATGATAGAATGATTAAAATGTTATCAGAAATTTAGTTTCTGGCCAACCAA
TAATTACAATCAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_f13.g1 MSMg01no082_f13.g1 CHROMAT_FILE:
MSMg01no082_f13.g1 PHD_FILE: MSMg01no082_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:47 2005
         (613 letters)



>mm_chr7_58630325_58631341
          Length = 1017

 Score = 1118 bits (578), Expect = 0.0
 Identities = 607/618 (98%), Gaps = 6/618 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctgcctgaagaacagcaattacaggtgtatagttcgaaatgtgttttatttatt--aa 58
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 201 ttctgcctgaagaacagcaattacaggtgtatagttcgaaatgtgttttatttattaaaa 260

                                                                       
Query: 59  aaaaaaactgcctgtgcaggtagaatatgacacttgtgttgtgacaaaagtaattccact 118
           |||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 261 aaaaaaactgcctgtggaggtagaatatgacacttgtgttatgacaaatgtaattccact 320

                                                                       
Query: 119 taaggactgataatctgaatatagattgttaaaatacgacaaaggttgagataataattg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaggactgataatctgaatatagattgttaaaatacgacaaaggttgagataataattg 380

                                                                       
Query: 179 caataaaagataattaaagttatgtttttgaagtctttcactttcaaccaaatgacaaac 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caataaaagataattaaagttatgtttttgaagtctttcactttcaaccaaatgacaaac 440

                                                                       
Query: 239 ta--agaatcagcgtgaggatgctgtttcagttaccagtgtagagtcagactcaacacaa 296
           ||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagagaatcagcgggaggatgctgtttcagttaccagtgtagagtcagactcaacacaa 500

                                                                       
Query: 297 gtcaggatctgtcacattggcggttatttctcacctgcagatggtgaattatcccacagc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcaggatctgtcacattggcggttatttctcacctgcagatggtgaattatcccacagc 560

                                                                       
Query: 357 tcacttcacattccagggtcttctgttatctgaagtgtgccttcttctcttgaataaaga 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcacttcacattccagggtcttctgttatctgaagtgtgccttcttctcttgaataaaga 620

                                                                       
Query: 417 agtgatccatccaaaggagaaagtcttgtgatgatgaaaatgtagcccaattatcatctg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtgatccatccaaaggagaaagtcttgtgatgatgaaaatgtagcccaattatcatctg 680

                                                                       
Query: 477 tcttgggaatctgtttatttaaaacccaacattccttacttaaatcattttaaacttatt 536
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 681 tcttgggaatctgtttatttaaaacccaacattccttacttaaatcattttaaatttatt 740

                                                                       
Query: 537 cttcttatgaaaggtcatttctccaagtgtttcaaattagggtaaataatgatagaatga 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttcttatgaaaggtcatttctccaagtgtttcaaattagggtaaataatgatagaatga 800

                             
Query: 597 ttaaaatgtt-atcagaa 613
           |||||| ||| |||||||
Sbjct: 801 ttaaaa-gtttatcagaa 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1017
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1007
Effective search space:   607221
Effective search space used:   607221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)