BAC Information

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BAC

Clone NameMSMg01-083K11
Chromosome7 (Build37)
Map Location 6,761,951 - 6,762,349
singlet/doubletsinglet
Overlap geneUsp29
Upstream geneV1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, LOC627961
Downstream geneAurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083K11.T7 (MSMg01no083_k11.b1)MSMg01-083K11.TJ (MSMg01no083_k11.g1)
ACCAG303714AG303715
length669670
length of high quality
(start - end)
530 (42 - 571)465 (71 - 535)
definitionCHROMAT_FILE: MSMg01no083_k11.b1 PHD_FILE: MSMg01no083_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:26 2005CHROMAT_FILE: MSMg01no083_k11.g1 PHD_FILE: MSMg01no083_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCTAAATTTGCGGCGCTAAACGATCACTATCAAAGAGGACCGCGGAAT
TCACACACTCCCCAGGCACGAGCTTAGGTAGACACAGATAGGCTGACAGG
TCTGGATCAGGAGGAACAGTCCAGCCTGGCAGGCAGCCCACGCATGCAGC
CTCATTGTGCATGCTCGGACAAGGCAGTAAACAAGTGGGTTTCATGGGGC
CTGCGGCTGCACCCACTTCCCGCAGGCACCCACATTCGTAAAAGAAACTT
TACTAAAGCTGAAAGCACACATTGTACCCAACTCAATAATAGTGGGAGAC
TTCAACACCCCACTCTCTCAAATGGACAGATCATGGAAGCAGAAACTAAA
CAGAGACATAGTGAAACTAACAGACATTATTAACCTAATGAATCTAACAG
ATATATATATACACAATATTTCATCCTAAAGCAAAAGAATGTACCTTCTT
CTCAGCACCTCATGGTCCCTTCTTCAAAACTGACCATATAATTGGTCATA
AAACAGGCCTCAATGTATACAAGAAGACTGAAATAATCCCATGTACCCTA
TTAGATCATCAGAGACTAATGCTGGTCTTAAATACCAACAAAAACAATAG
AAAGCACGCATACACCTGGATGCTGAACAATGCTCTCTACTCAATAATAA
CTTGATCACAGGAAAAATA
NCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTCATGAGTTGTCTTCTGACCTTCATACA
TATGTGATGGCCTGAACACACCCCACAGATAAAAACATGCAAAAAATAAG
GACGGGTAAGATAAGAGTGAAATGAGAGAAGGTTGTTTCAGATAGTCAGA
GAACTTTCTAGGGTGACAGCAGCGGTTTGAATGATGGGAATGGGCATGGT
GCAGAAAAAGAGCCTTCCAAAGGGCAATCCAGCAAGTGCATGTTGTTTGA
CACTATTCTTGAGTAAACACGAGCAAATGTCTGCTCACCCCAGACAAGAA
ACCATCAGCAGGCCGAATCAGGATACCACCTGTGATAGCTAATTTTGCTT
TCGAACTTGACTGCATCTGAGATCCACTAAAACACAAGCTGTTGAGTACT
CTGTGAATGACTTCCTTGGCTGGCTTACTTGAAATGGGAATTCACCCTAA
ATCTGGATGGCTCCTTCTAATGGCCATCCAATGACAAGGACCTGAAGGAA
GGTATCTTTGCTTTTTGCCTTCTTACCCTCACTCTCCGCAGAAAGAATTG
TTGTGGTATTCCTTTATCTACAACTTCTTGAGATCTCATTTATATACTGA
AGGCCTGCAGCTCTTCAGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_k11.g1 MSMg01no083_k11.g1 CHROMAT_FILE:
MSMg01no083_k11.g1 PHD_FILE: MSMg01no083_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:26 2005
         (465 letters)



>mm_chr7_6761930_6762794
          Length = 865

 Score =  702 bits (363), Expect = 0.0
 Identities = 390/399 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcatgagttgtcttctgaccttcatacatatgtgatggcctgaacacaccccacagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 attcatgagttgtcttctgaccttcatacatatgtgatggcctgaacacaccccacagat 361

                                                                       
Query: 61  aaaaacatgcaaaaaataaggacgggtaagataagagtgaaatgagagaaggttgtttca 120
           ||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 360 aaatacatgcaaaaaataaagacgggtaagataagagtgaaatgagagaaggttatttca 301

                                                                       
Query: 121 gatagtcagagaactttctagggtgacagcagcggtttgaatgatgggaatgggcatggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 300 gatagtcagagaactttctagggtgacagcagcggtttgaatgatgggaatgggcatggc 241

                                                                       
Query: 181 gcagaaaaagagccttccaaagggcaatccagcaagtgcatgttgtttgacactattctt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 240 gcagaaaaagagccttccaaagggcaatccagcaagtgcatgttgtttgacactattcct 181

                                                                       
Query: 241 gagtaaacacgagcaaatgtctgctcaccccagacaagaaaccatcagcaggccgaatca 300
           | ||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||
Sbjct: 180 gggtaaacacgagcaaatgtctgctcaccccagacaagaaaccgtcggcaggccaaatca 121

                                                                       
Query: 301 ggataccacctgtgatagctaattttgctttcgaacttgactgcatctgagatccactaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ggataccacctgtgatagctaattttgctttcgaacttgactgcatctgagatccactaa 61

                                                  
Query: 361 aacacaagctgttgagtactctgtgaatgacttccttgg 399
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 60  aacacaagctgttgagtactctgtgaatgacttccttgg 22


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)