BAC Information

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BAC

Clone NameMSMg01-083N21
Chromosome7 (Build37)
Map Location 50,885,932 - 50,886,413
singlet/doubletsinglet
Overlap genenone
Upstream geneC330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik
Downstream geneCeacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083N21.T7 (MSMg01no083_n21.b1)MSMg01-083N21.TJ (MSMg01no083_n21.g1)
ACCAG303874AG303875
length712701
length of high quality
(start - end)
327 (81 - 407)484 (66 - 549)
definitionCHROMAT_FILE: MSMg01no083_n21.b1 PHD_FILE: MSMg01no083_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:43 2005CHROMAT_FILE: MSMg01no083_n21.g1 PHD_FILE: MSMg01no083_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACCCATAACGGAGAATATCTGGCATCAGAATAAGGGGAAGAGCCTAGGT
TAAAAAGTTTTGGATATTAGACAAGAGTTAGCCCCTTATTAGTCCTCTAT
TGTTAATCTGGGCTGCCCTCAGTCACCATGAATTTTATTAGGCAATAGGC
TGACAGTCTGATTAGTGCCTATCCCTGTGTAGTGCAGGAGCTGGGTATTG
AAGCATCACCAGCGATCCTGGCCAATTTTTGGCTGGGAATGATTAACTCT
ATCCTCAGGGTCTTTTCCTATGGCATAGAGTCTGATACCCCAGGTTTTTC
TTGTATCCCATGAGCCTGAATATGTTTTAAGGGATTTCCAGATTTTTAAT
TTTATGCCCACCGCATTACATTTTCCTATTGTGCATTTCTTGGTATGGGA
CTCTCTTTCTATATATTCATCTGCATATTTTTAGGAAATCTCTATTTTAC
AATGCCAGTTTTTGCAATGTAAATTCCATTGTTTCTGTCAACTAATGGGT
TCAACTGTTGGTTATGCTTAAAGTTGTACACTCTGTATTTCTTTCTTCAA
ATGATAAACCCAAGCTTCTTTCCCTTCCCTTCCCCTTCCCTTCCCTTCCC
TTCTCTTTCCTTCCCCTTCTCTTACTTTCCCTTCCCCTCCTTTTCCCTCC
CTCATTCCGCGC
GATGTGTGTAGCCTGGCGGCGCCTGTXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGNCAAGAAACCTGGACCAACAAGCACAGCTCTT
CTCTCACCATTGGCACATCTTGCGTTAAGAGGTGTGAAACAAAGAGATGA
AGTCTGGATGGGTGATAGTTGTGCTAAAGGAATGCCCCCAGATTGGAGCC
CCTGTGACGTTCCATTCTTAGGACACAAGGTCCTTCCCATGGCAGCTCTC
ACATTTATGCCTGGCACCACAGGGCCCAGTCTAGTCCTTCACATGAAGCC
TTTTCTGTTTACCTTTTCACAGATGCCAGAGGGGAGGCTGGTCCAAAGCT
ACTCAACGCCGTGCTGCCTCTGTGAAGGAAGTAGCTGTCTTATACACATG
TCGAGCCTCTTCTTCTGTAGCCTAGCCCCCCTCCAAGCCTTCCAGTAATA
CCAGACACGAGCTGTCCTGCTTCAGGGAATGACTCAACATTTCTCAGCCT
CTGTTGTAGCCTGTAGAGTGGGGCTTATGTTTGGATCAGCTTTGACTTGC
CGTACTAGAGCAGCATTTATAGACAAGGGTGTGTCAAGTCCAGCCTTCAT
GTCTAAGACTTATATCATGTTCTCCCAGCTCAAGTATCCTGCATATAAAC
CCCACAGCACTTGAATGTGTTCTGCATATTCTCCCCCCCCCCGTCCTCTT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_n21.g1 MSMg01no083_n21.g1 CHROMAT_FILE:
MSMg01no083_n21.g1 PHD_FILE: MSMg01no083_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:43 2005
         (484 letters)



>mm_chr7_50885728_50886613
          Length = 886

 Score =  897 bits (464), Expect = 0.0
 Identities = 477/482 (98%), Gaps = 2/482 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   caagaaacctggaccaacaagcacagctcttctctcaccattggcacatcttgcgttaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 caagaaacctggaccaacaagcacagctcttctctcaccattggcacgtcttgcgttaag 264

                                                                       
Query: 65  aggtgtgaaacaaagagatgaagtctggatgggtgatagttgtgctaaaggaatgccccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggtgtgaaacaaagagatgaagtctggatgggtgatagttgtgctaaaggaatgccccc 324

                                                                       
Query: 125 agattggagcccctgtgacgttccattcttaggacacaaggtccttcccatggcagctct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agattggagcccctgtgacgttccattcttaggacacaaggtccttcccatggcagctct 384

                                                                       
Query: 185 cacatttatgcctggcaccacagggcccagtctagtccttcacatgaagccttttctgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 cacatttatgcctggcaccacagggcccagtctagtccttcacatgaagccgtttctgtt 444

                                                                       
Query: 245 taccttttcacagatgcca--gaggggaggctggtccaaagctactcaacgccgtgctgc 302
           |||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||
Sbjct: 445 taccttttcacagatgccacagaggggaggctggtccaaagccactcaacgccgtgctgc 504

                                                                       
Query: 303 ctctgtgaaggaagtagctgtcttatacacatgtcgagcctcttcttctgtagcctagcc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctctgtgaaggaagtagctgtcttatacacatgtcgagcctcttcttctgtagcctagcc 564

                                                                       
Query: 363 cccctccaagccttccagtaataccagacacgagctgtcctgcttcagggaatgactcaa 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cccctccaagccttccagtaataccagacacgagctgtcctgcttcagggaatgactcaa 624

                                                                       
Query: 423 catttctcagcctctgttgtagcctgtagagtggggcttatgtttggatcagctttgact 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 catttctcagcctctgttgtagcctgtagagtggggcttatgtttggatcagctttgact 684

             
Query: 483 tg 484
           ||
Sbjct: 685 tg 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 886
Length adjustment: 10
Effective length of query: 474
Effective length of database: 876
Effective search space:   415224
Effective search space used:   415224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)