BAC Information

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BAC

Clone NameMSMg01-083O12
Chromosome7 (Build37)
Map Location 30,352,775 - 30,353,189
singlet/doubletsinglet
Overlap gene4930432E11Rik
Upstream genePak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik
Downstream gene1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083O12.T7 (MSMg01no083_o12.b1)MSMg01-083O12.TJ (MSMg01no083_o12.g1)
ACCAG303904AG303905
length980714
length of high quality
(start - end)		---415 (68 - 482)
definitionCHROMAT_FILE: MSMg01no083_o12.b1 PHD_FILE: MSMg01no083_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:46 2005CHROMAT_FILE: MSMg01no083_o12.g1 PHD_FILE: MSMg01no083_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCCCCCCCCCCCNNNNCCNCCCCCTCTCCCACCANCCCCCTCGCT
CCTCCCCCCCNCCCCCTTTCCNNTCTTTTCTTCCTTCCCTTTCTTTTTTT
TCCTTCTCTTCTTTTTCTTCTCCTTTTCCCCATTACCACTCTCTCACCCC
TTCTTCCACGTCCTATACCAGAAATCCAACTCTCCCTACCTCGATACCCA
CCATATCACTACCTCCACTATATTCACAACAATCATATTTCAAAATTTTA
TATCCTATTCTTCTTCCCCCCCCTATTCCCATAACCTCCACCCCTTTACA
CTTCTTTCAACTCCCACCTCCATTACTATAACTTCCCTTATGTCCTACCC
CTTTACAACCTCCACCCACTCTACCCTTGATAACCTAAAACAATATCGAA
CATAAATAACAATCCCAAGCGCAGTCAACCCCACTTTAATACTAACTGTC
AATAAATAAACAACTACATCCAATCTAAACGCTATATCATTAATAATAAT
AAAACGAATCACATTAAACTCTTCAAAAGCAAACAATAAACACACCTCAT
AACTCAATATATATATAATTAACAATACATTACTAACAGCATCATTATCA
CTATTCCACATTATATAAATTTAACTCTCAACAATAAACACCCACGATAC
CGACTATTACTCGCGAGTTACGCGGCGTTATTGAACACGGTCCTGACTCA
GGATGCATATATAGTGGTGAAGCACATCACGCGGCACGTTAGGGAGTGAG
GTCATAGTTATCGGCAGGGGGGTGTAGTCAAGTTATTACTAGACTGTAAG
TGACATTAATGAAAATCGCAGAGAAGAGTATTCTATGCGACTATTTTCAC
GCGACAGACACACCAGCGCGTGATGAGATATGAAGATCATCAAGACAGCA
ATACGTGAAGTAGTACACGCCATTATACATACAGAATGATATATTTATAC
CCACAATACAATAAGACACACAATAAAAAC

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGAGTTTTGAGGAGAAGCCCTTTCCTGAAAAC
CCAAGTCAGAAATAGACATGGTGACTTTACCCCCTAGAACTTGGGGGACT
GAGATGGTGGGATCACAAGTTCAAGGCTAGCTTGGACTGCATACAGAGTT
CCAGGCCAATGTAGGCTTTGTGGTGGGAGATACTGTCTCAGAAAACAAAC
AAAAATCACCAAGCAAATAAAACAAACTTAAAACTAAACAAAAGCCAGAC
CAGGAAGAAGTTATAGCCATATTCTGGTTTTGCCTGGGTGAGATTATGAA
TAACATCATTTGCCTTTTTAGGCACCAGGCAGGAAACATCATTAGACCTT
GTAATGCATATTTTATTGGTAAATTGTCAAATGCTTTTTAAATTCACTTG
AAAGCTGGGTCTGGAAGCAAGAATGGCTCCTAATGTTAGACTCCAGAACT
CTAGATCCTGAATGAGGTCACTGTCCCCATACCAGTTGTATGACAGATCA
GAATCTCTACCTGCCAAGGTTATTAACAGCACTGTGCCCTTGAGAACAGA
TGGTATGCGAATTGTCTTCTTGTTGAGGTTAGCATTTTGTTCCTCTGATC
TTTTGTCTCTGTTACTAATCTAGATCACTATTCCAATCCTTGGATATTAG
CCCTGTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_o12.g1 MSMg01no083_o12.g1 CHROMAT_FILE:
MSMg01no083_o12.g1 PHD_FILE: MSMg01no083_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:46 2005
         (415 letters)



>mm_chr7_30352388_30353202
          Length = 815

 Score =  779 bits (403), Expect = 0.0
 Identities = 412/415 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagttttgaggagaagccctttcctgaaaacccaagtcagaaatagacatggtgactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 cagagttttgaggagaagccctttcctgaaaacccaagtcagaaatagacatggtgactt 743

                                                                       
Query: 61  taccccctagaacttgggggactgagatggtgggatcacaagttcaaggctagcttggac 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 742 taccccctagaacttgggggactgagatggtaggatcacaagttcaaggctagcttggac 683

                                                                       
Query: 121 tgcatacagagttccaggccaatgtaggctttgtggtgggagatactgtctcagaaaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tgcatacagagttccaggccaatgtaggctttgtggtgggagatactgtctcagaaaaca 623

                                                                       
Query: 181 aacaaaaatcaccaagcaaataaaacaaacttaaaactaaacaaaagccagaccaggaag 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 622 aacaaaaatcaccaagcaaataaaacaaacttaaaactaaacaaaagctagaccaggaag 563

                                                                       
Query: 241 aagttatagccatattctggttttgcctgggtgagattatgaataacatcatttgccttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aagttatagccatattctggttttgcctgggtgagattatgaataacatcatttgccttt 503

                                                                       
Query: 301 ttaggcaccaggcaggaaacatcattagaccttgtaatgcatattttattggtaaattgt 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 502 ttaggcaccaggcaggaaacatcattagaccttgtaatgtatattttattggtaaattgt 443

                                                                  
Query: 361 caaatgctttttaaattcacttgaaagctgggtctggaagcaagaatggctccta 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 caaatgctttttaaattcacttgaaagctgggtctggaagcaagaatggctccta 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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