Query= MSMg01no084_b16.b1 MSMg01no084_b16.b1 CHROMAT_FILE:
MSMg01no084_b16.b1 PHD_FILE: MSMg01no084_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:02 2005
(586 letters)
>mm_chr7_111167542_111168526
Length = 985
Score = 1009 bits (522), Expect = 0.0
Identities = 567/582 (97%), Gaps = 1/582 (0%)
Strand = Plus / Minus
Query: 5 gaattccatgtatacttgcgccctaactaggaagtcccctgacaaattgctcactctact 64
||||||||||||||| | || || |||||||||||||||||||||||||| ||||||||
Sbjct: 785 gaattccatgtatacaagtgctctgactaggaagtcccctgacaaattgcttactctact 726
Query: 65 ctacggaattatacctacacttaaaagggtgtgtttatctttccatttaaacttttagct 124
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 725 ctacggaattatacttacacttaaaagggtgtatttatctttccatttaaactttaagct 666
Query: 125 gggtggaacctcatgatttcttcacaaatgctaaacttttaatataatattaagttcaat 184
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 665 aggtggaacctcatgatttcttcacgaatgctaaacttttaatataatattaagttcaat 606
Query: 185 gttctattagtgtatatttgctttactgatgtgtttgtaatattattttcattcaagtgt 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 605 gttctattagtgtatatttgctttactgatgtgtttgtaatattattttcattc-agtgt 547
Query: 245 atcaagtgctttgaccatcttccccattaccctcttctagtctccatttctcctctgata 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 atcaagtgctttgaccatcttccccattaccctcttctagtctccatttctcctctgata 487
Query: 305 gtttcctctacttccttaatagtccttcttctaacttaatgtcacaaacacacgtgtgct 364
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 486 gtttcctctacttccttaatagtccttcttctaacttaatgtcacaaacacatgtgtgct 427
Query: 365 tgaattacatgacagggaaaattataaaattttctttctgaatctgttctaccttgcagt 424
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tgaattacatgagagggaaaattataaaattttctttctgaatctgttctaccttgcagt 367
Query: 425 gggcacataaaatagtttatgacaattttatacagatgtatcattttctttggtttcagt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gggcacataaaatagtttatgacaattttatacagatgtatcattttctttggtttcagt 307
Query: 485 ctcacacaacctttccttgtctctcccctgtctctcctcctcccttctatttgtttcttt 544
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 306 ctcacacaacctttccttgtctctcccttgtctctcctcctcccttctatttgtttcttt 247
Query: 545 ctttctccaaataaccctcttttgctttcatatatcacacaa 586
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ctttctccaaataaccctcttttgctttcatatatcacacaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 985
Length adjustment: 10
Effective length of query: 576
Effective length of database: 975
Effective search space: 561600
Effective search space used: 561600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no084_b16.g1 MSMg01no084_b16.g1 CHROMAT_FILE:
MSMg01no084_b16.g1 PHD_FILE: MSMg01no084_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:02 2005
(550 letters)
>mm_chr7_111165130_111166079
Length = 950
Score = 957 bits (495), Expect = 0.0
Identities = 527/543 (97%), Gaps = 9/543 (1%)
Strand = Plus / Plus
Query: 1 tcacccactctgtgatagaatttcatggctatggatcagtgtgagacatgacagacccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 tcacccactctgtgatagaatttcatggctatggatcagtgtgagacatgacagacccat 269
Query: 61 atcatcatcatcatcatcatcatcatcatcatcatcatcaatcaacatcatcatcacacc 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 270 atcatcatcatcatcatcatcatcatcatca---------atcaacatcatcatcacacc 320
Query: 121 acctgtattactaagatgacatttagtaatcccagctgaaagcacctgggaaactatggg 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 321 acctgtattactaagatgacatttagtaattccagctgaaagcacctgggaaactatagg 380
Query: 181 gcatttgaatccatattattctttctaaagaagacctatataacaatgggatttgttgac 240
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatttgaatccatactactctttctaaagaagacctatataacaatgggatttgttgac 440
Query: 241 ttatttattgtcttaaaactctctatcatggattaaataacttgtagcacatatttatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttatttattgtcttaaaactctctatcatggattaaataacttgtagcacatatttatat 500
Query: 301 acacacaggcattaacagaaattttaaaatataggactataattatagaacctgagaagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acacacaggcattaacagaaattttaaaatataggactataattatagaacctgagaagc 560
Query: 361 caatagaatgatgaataaaaacacacttcttgtacacatatcaagttcaacatcacctga 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caatagaatgatggataaaaacacacttcttgtacacatatcaagttcaacatcacctga 620
Query: 421 gagggctatatgaaggaattcttagatttacagttggccaaagttcataatggttccaca 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 gagggctatatgaaggaattcttagatttacagatggccaaagttcataatggttccaca 680
Query: 481 ttggccttaggcagccactagtcacaaaccaaagatggactttatatatctaagcaagag 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 681 ttggccttaggcagccactagtcacaaaccaaaggtggactttatatatctaagcaagag 740
Query: 541 acc 543
|||
Sbjct: 741 acc 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
