Query= MSMg01no084_k20.b1 MSMg01no084_k20.b1 CHROMAT_FILE:
MSMg01no084_k20.b1 PHD_FILE: MSMg01no084_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:46 2005
(527 letters)
>mm_chr7_140023967_140024891
Length = 925
Score = 969 bits (501), Expect = 0.0
Identities = 517/523 (98%), Gaps = 2/523 (0%)
Strand = Plus / Plus
Query: 5 gaattcatgacatttgacccaaaacaaagactccatgaagagcttcctcagcgggaagga 64
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgacatttgaatcaaaacaaagactccatgaagagcttcctcagcgggaagga 264
Query: 65 acatcctcaccctaagcccctgtacgacattctggtattccaaaggtgcttcatgacact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acatcctcaccctaagcccctgtacgacattctggtattccaaaggtgcttcatgacact 324
Query: 125 tctacttattaaatataggatacagcagcaagggagagagtaaagaaatctgtgttggaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctacttattaaatataggatacagcagcaagggagagagtaaagaaatctgtgttggaa 384
Query: 185 tagaataaccttgtgctttctacagggagagacaaacaacaaataagctgctattgttga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagaataaccttgtgctttctacagggagagacaaacaacaaataagctgctattgttga 444
Query: 245 agagaatcatccagaatacacacattggaaacctaaacacagtcacctgctatcaggatt 304
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 445 agagaatcatccagaatacacacattggaaacctaaacacagtcacatgctatcaggatt 504
Query: 305 aggaagagatccctggaaggtgactgagtcaccaagtctctctcttcgtgaacagattaa 364
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 505 aggaagagatccctggaaggtgactgagtcatcaagtctctctcttcgtgaacagattaa 564
Query: 365 tgggctaatgaggggctggctttgttataaaggaaaactttctctggcttacttgctttg 424
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 565 tgggctaatgaggggctggctttgttataaaggaaaact--ctctggcttacttgctttg 622
Query: 425 ctatggcacagaaagaaggccccttatcacatcatttaagaatcctagacttttcagcca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctatggcacagaaagaaggccccttatcacatcatttaagaatcctagacttttcagcca 682
Query: 485 ctagaactgtggagttaataaacttctatgctttacaaattac 527
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctagaactgtggagttaataaacttctatgctttacaaattac 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 925
Length adjustment: 10
Effective length of query: 517
Effective length of database: 915
Effective search space: 473055
Effective search space used: 473055
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no084_k20.g1 MSMg01no084_k20.g1 CHROMAT_FILE:
MSMg01no084_k20.g1 PHD_FILE: MSMg01no084_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:46 2005
(436 letters)
>mm_chr7_140216378_140217215
Length = 838
Score = 820 bits (424), Expect = 0.0
Identities = 434/438 (99%), Gaps = 2/438 (0%)
Strand = Plus / Minus
Query: 1 caagatatttccgaggaacccactctagccctcttgatgttttcaagtcttcagtatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 caagatatttccgaggaacccactctagccctcttgatgttttcaagtcttcagtatttt 579
Query: 61 tgaaaatgtctggaagtgttttattcatgaaaggaaaaaataaacataattaaaatctaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tgaaaatgtctggaagtgttttattcatgaaaggaaaaaataaacataattaaaatctaa 519
Query: 121 tggaaacccggggataaaactctgaaacattgattaagcgctgtcctttcctaattagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tggaaacccggggataaaactctgaaacattgattaagcgctgtcctttcctaattagtg 459
Query: 181 aggagcaaggaccgccaaacctgcaactcggggtttatacgggctgtgccagcctgcagt 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aggagcaaggcccgccaaacctgcaactcggggtttatacgggctgtgccagcctgcagt 399
Query: 241 cagtgctgcaggactagccttgtctaggagtgttttcaaggctagcttggctcttggtat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 cagtgctgcaggactagccttgtctaggagtgttttcaaggctagcttggctcttggtat 339
Query: 301 gttaggtgtattccagcctgtagcagagggcacacaggcaaagctgccacaccagctctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gttaggtgtattccagcctgtagcagagggcacacaggcaaagctgccacaccagctctc 279
Query: 361 aggcaggccacacaccccc--acaacttcccctgcagccacccatatggaattgcttgtc 418
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aggcaggccacacccccccccacaacttcccctgcagccacccatatggaattgcttgtc 219
Query: 419 ctttaaatagatgtagct 436
||||||||||||||||||
Sbjct: 218 ctttaaatagatgtagct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 838
Length adjustment: 9
Effective length of query: 427
Effective length of database: 829
Effective search space: 353983
Effective search space used: 353983
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
