BAC Information

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BAC

Clone NameMSMg01-084L19
Chromosome7 (Build37)
Map Location 76,802,123 - 76,908,686
singlet/doubletdoublet
Overlap genenone
Upstream geneArrdc4, LOC384741, EG665410
Downstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084L19.T7 (MSMg01no084_l19.b1)MSMg01-084L19.TJ (MSMg01no084_l19.g1)
ACCAG304507AG304508
length715715
length of high quality
(start - end)		554 (36 - 589)467 (65 - 531)
definitionCHROMAT_FILE: MSMg01no084_l19.b1 PHD_FILE: MSMg01no084_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:51 2005CHROMAT_FILE: MSMg01no084_l19.g1 PHD_FILE: MSMg01no084_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,908,172 - 76,908,686)(76,802,123 - 76,802,589)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTGA
CAGCCTTCCACTAGACTTACAGTAGCTACACACATAGGATATTGGGGGAT
TTTTGGTTCTTAGATGATATGAATAAGATTCTAGAAATATTTTGCAATTT
CTTTCCTTCTTATAACAGATTTAAAAATGTTTTATTAGCATATATTAATT
ACACATAAGGGGTTTTATTGTGGTATTTTCATATTTATACATAAACATAT
TTGACCATATTCACACATATACCTTGTAGCTCTCTCTTTGGTCTCTCTTA
TTCCTGCTAATCCCCTTTTCTTTACAATTATCATTATTAAATATTATTAT
AATCCTCCCCCATTTTCCTCTATCCCCCCATTCACTGCTCCTCCATTTCT
ATTCAGAAAAGAGCAAGCATTTCATGAATGTCAACCAAACATGGCATATC
AAGTTGCAGTAAGACAGGGCATCTCCTCTTATACTCAGGCAGGATAAGGC
AACCCAGCATGAGAAAAGGAGTCCCAACAGCTGGCAAAAGAGTTGGAAAC
AGTACCTGTTCCTACTATTAGGAGTTCCACAGGAATAAAAGCCTTAACTG
GTCATTTTCTATAACCACAACAGACAGATTTCCAGGGAAGGGATTTGGAC
ACCAACACAGCCACCTTTGGGACATGACCAAACATAACCTTTTGATGTAC
AATTTGTCCTGCCTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCTATAGCAAGCTTCATATCAGAATTATTGAACCAA
TCAGGTAGAAACAGCTATATCATTCAATAAAATCAAGTCATACTCAGGAG
AAGATGACTTGGATATTAGAAGAATTGGTCTAAACTTTGATGTCGTAGAT
GAGTTTACTGCACGGCATTTAGCCACACATTCTGAGAGTGAATATGTCTC
TGAGCATATATGAACTTGCATTAAAGTTGTTCATTTATTCATTAATCACC
ATCATCAGTCACATTATTTAGCGCAGCTCATTCTCAGCACTTTTCTTCTA
GACAACTTCATCATTCTGATTCTCTTCTTTCTGATTGGCCTTTCTCCAGG
GTGTGTTATTTTCCACACCCGCTGCATATCAAGGTGGGCTATCTAGGGTG
AATAGAATCCATGTTTGCTCAGGAAAACTGATATATAAAACAATGGTGTG
AAAATTATGACATTGATTTTAAAATATCATAGTAACTAGTTAGTGTTCTT
TTTTTGCTGTTTTTTGTTTTGTTTTGTTTTACGTATGTTTGTGTTCAAAC
TTGAGTTTTGGTACCTACAATGTATGTGATTGAACACTACAAATGTTATT
TTGTGCTCAGCAGAAAATTCCAGATTAAAAATGTAATTTTTTTAAAAAAT
TTAGTTTATAATGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_l19.b1 MSMg01no084_l19.b1 CHROMAT_FILE:
MSMg01no084_l19.b1 PHD_FILE: MSMg01no084_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:51 2005
         (554 letters)



>mm_chr7_76908172_76909125
          Length = 954

 Score =  980 bits (507), Expect = 0.0
 Identities = 513/515 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtgacagccttccactagacttacagtagctacacacataggatattggggga 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattctgtgacagccttacactagacttacagtagctacacacataggatattggggga 456

                                                                       
Query: 65  tttttggttcttagatgatatgaataagattctagaaatattttgcaatttctttccttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tttttggttcttagatgatatgaataagattctagaaatattttgcaatttctttccttc 396

                                                                       
Query: 125 ttataacagatttaaaaatgttttattagcatatattaattacacataaggggttttatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ttataacagatttaaaaatgttttattagcatatattaattacacataaggggttttatt 336

                                                                       
Query: 185 gtggtattttcatatttatacataaacatatttgaccatattcacacatataccttgtag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gtggtattttcatatttatacataaacatatttgaccatattcacacatataccttgtag 276

                                                                       
Query: 245 ctctctctttggtctctcttattcctgctaatccccttttctttacaattatcattatta 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 275 ctctctctttggtctctcttattcctgctaatctccttttctttacaattatcattatta 216

                                                                       
Query: 305 aatattattataatcctcccccattttcctctatccccccattcactgctcctccatttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 aatattattataatcctcccccattttcctctatccccccattcactgctcctccatttc 156

                                                                       
Query: 365 tattcagaaaagagcaagcatttcatgaatgtcaaccaaacatggcatatcaagttgcag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 tattcagaaaagagcaagcatttcatgaatgtcaaccaaacatggcatatcaagttgcag 96

                                                                       
Query: 425 taagacagggcatctcctcttatactcaggcaggataaggcaacccagcatgagaaaagg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  taagacagggcatctcctcttatactcaggcaggataaggcaacccagcatgagaaaagg 36

                                              
Query: 485 agtcccaacagctggcaaaagagttggaaacagta 519
           |||||||||||||||||||||||||||||||||||
Sbjct: 35  agtcccaacagctggcaaaagagttggaaacagta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no084_l19.g1 MSMg01no084_l19.g1 CHROMAT_FILE:
MSMg01no084_l19.g1 PHD_FILE: MSMg01no084_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:51 2005
         (467 letters)



>mm_chr7_76801923_76802789
          Length = 867

 Score =  818 bits (423), Expect = 0.0
 Identities = 456/467 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatagcaagcttcatatcagaattattgaaccaatcaggtagaaacagctatatcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctatagcaagcttcatatcagaattattgaaccaatcaggtagaaacagctatatcatt 260

                                                                       
Query: 61  caataaaatcaagtcatactcaggagaagatgacttggatattagaagaattggtctaaa 120
           |||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||
Sbjct: 261 caataaaatcaagtcatactcaggagaaaatgacttggatatttgcagaattggtctaaa 320

                                                                       
Query: 121 ctttgatgtcgtagatgagtttactgcacggcatttagccacacattctgagagtgaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttgatgtcgtagatgagtttactgcacggcatttagccacacattctgagagtgaata 380

                                                                       
Query: 181 tgtctctgagcatatatgaacttgcattaaagttgttcatttattcattaatcaccatca 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtctctgagcatctatgaacttgcattaaagttgttcatttattcattaatcaccatca 440

                                                                       
Query: 241 tcagtcacattatttagcgcagctcattctcagcacttttcttctagacaacttcatcat 300
           |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagtcacattatttagcacaactcattctcagcacttttcttctagacaacttcatcat 500

                                                                       
Query: 301 tctgattctcttctttctgattggcctttctccagggtgtgttattttccacacccgctg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 tctgattctcttctttctgattggcctttctccagggtgtgttattttccacaccctctg 560

                                                                       
Query: 361 catatcaaggtgggctatctagggtgaatagaatccatgtttgctcaggaaaactgatat 420
           |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 catatctaggtgggctatctagggtgactagaatccatgtttgctcaggaaaactgatat 620

                                                          
Query: 421 ataaaacaatggtgtgaaaattatgacattgattttaaaatatcata 467
           |||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 ataaaataatgctgtgaaaattatgacattgattttaaaatatcata 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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