BAC Information

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BAC

Clone NameMSMg01-085F20
Chromosome7 (Build37)
Map Location 51,640,576 - 51,640,729
singlet/doubletsinglet
Overlap geneSyt3
Upstream geneSiglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik
Downstream geneLrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-085F20.T7 (MSMg01no085_f20.b1)MSMg01-085F20.TJ (MSMg01no085_f20.g1)
ACCAG304972AG304973
length1,1381,304
length of high quality
(start - end)		74 (70 - 143)154 (121 - 274)
definitionCHROMAT_FILE: MSMg01no085_f20.b1 PHD_FILE: MSMg01no085_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:36:02 2005CHROMAT_FILE: MSMg01no085_f20.g1 PHD_FILE: MSMg01no085_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:36:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAATAGCCATCCCCCTGCTGTCATGCTGAATAGAATTTCCAGGGATGGA
AGCTAAATCAGAACCCCAGCACCTAGATTGTCTCCAGTTAGAAGTAATCC
CAGACCACTCCCATTCACATCATAGGCATTCTACAATGATTGCCCCAACG
TGCAAATTGTGACTGGTCAGTTCCCATTCTACAGTCAGTCCTTTCAGGAT
TAAATGTCTTGCTTCTCTGATCCCCTCCCTCATCTTTACTGTGTTTCTAA
TGCTGTACTACTGTCACTGTAGGAGATGAGGGCGAGCCATTTTTTTTTAC
TGAGATTGCTCACTCACTGTATTCTTTATCATATCACCACCTCCTCTGTC
TCTCATGCAGTATTGTCTGTTCCTTTTTACTTATTCTCTGTTGTATACTT
GATCTTCTTGTATTTTTTCCTACTATCTTTGTTTCTCGCTTATATATTTT
TGTATTTAATTCTTCTTTTATTAATTCTTTGTTTTATTTATTTTTTTATT
TCTTCTTTTTTATCTCCTCTTTTTTCTTCTTTCTTTACCATTTTCTTTCC
AATCTCTTACACTTTTCTTCTTTTTTTCCTTGTTTACCTTTCTTCTTATT
CTGTTGTTTTATTTTTTTTCTCTATTTTTCTCTTTTTTTTTTTATTTTTT
AATTATTTTTTATTTCTTCTCTTTTTATTTCTCTTTTTTCTTTTTCTTTT
TTTTTTTTTATTTTTTTTTTTTCTTTCTTCTTTTCTTTTTTTTTTTTTTT
TTGTTTCTTCTTTCTATTTATTTTTATATCTCTTTCTTTCTTTTTTTTTT
AGTTTATTTTTTATTTTTCCTTCTTTTTTTTCATATCTTTCTTCTTTATT
TTATCTTTTTACTCTTTCTTTTTCTATTCTTTTTTCTTATTTACCTTTTT
TATTTTTATATCTATTTTTTGATTTTACTATTTTTTTTATTATTTCTTCT
TTTTTACTTTCTATCTTTTCTTTTATTTTTTTTCTTATATTTTCATTCTT
TTTTTTATACTATCTTTTTTTTTTTTTTTTTTTTTTTTTATATTTTTCTT
CCTTTTATCTTTAACATTCTATTATATTTTTTTCTATTTCCTCTCTTTTC
TACTTCTCTCTTTCGCTCTCTTTTTTTTTTTTTTATTG

TCTATGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCCCTTTAGAATAGAGGTTCAGGACAGAGGCTGGGGAACA
GCCCCGTACTTCATTATCCCCGAGACATGGTGCACACACAGAGAGAAGTG
AAGCCAGGTAGGCAGGGGTGTGGGCAGAAATACCTTCCAATGAGACACAG
GTAGATCAGAAGAGAGAGAGAAAAGATGCTGAATTCCAGGTTGGACAACC
AGACAATGGCTGGAGACCTCAGATACAAGGCAAGAGAAGAGAGTTGGGAA
CACAGACAGACAGAAGCATGGTCAGTTCAAAAAAATAAGGATAACAGGAG
AGAGAGGTGTAGCTGGGCGAGGAGGGAGTAACACATGGTAAGGTTTTTTT
TTAGATATTACACATCGGTGGTTAAAGAGGCCTCCTCCCTCTTACCTAAT
GAACTAGTTCCCTTATTGTCTTTATTAATCTTGTCTTGCTAATGTAGATT
GTACTGTCTATTTTTTCTGTTGTCTTTTCTTTTCTGCTGCTCATTCCTTG
TTCTTGTTCCTGTGTTTTTTTTCGATTCTTTCATTTTTTTTTTTTTCCTC
ATGTTTCTTTTTTTTTTATCTTTTCTTTTTTATTTTTCTTCTTTATTTTT
TTTCTTTTTCTTTTGTTATTTTTTTTATTTATTTTTTTTTCTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTCCCTTTTTTTCTTATTTCTTATTTTTTTTTTTTTTCTTTTTT
CTATTTTTTTTTTTTCCATCTTTTTTATTTTTTTTTTTCTTTTTTAATTT
TTTTTTTTTTCATTTTGTTTTTTTTTTTTCTTTTTTTTTTTATTTTCTCT
TTTTTTTTTTTATTTTTTATTTCTTTTTTCCTTTTTTTTCTCTTTTTTTT
CTTTTTTTATTTTACTTTTTTTTTTTTTTTTTTTTTTTCTTTATTTTTTT
TTTTTTATTTTTATTTTCTTCTTTTTTTTTTTTTTTTTTTTATTTTTTTA
TGTTTTTAGCTTTTATCTATTTATCTTTTCTTCTTTTCTTCCCATTCTTT
CTACTATCTTTATTCTCTTCTTATCTTTTTTTTTTTTTTCCCCCTCTATT
TCTTTGTTTTTTTTTCTTCTATTTTTTTCCTACTCATTATTTTTATCTTT
TAATATGATTTGTTTTCTTCATTTTTTATTTATCTTTTTTTTCTTTTATC
TTTTCTTCTTCTTTTATCTTATTTTTCGTTCTTATCACTTTTTCCTTATA
TTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no085_f20.g1 MSMg01no085_f20.g1 CHROMAT_FILE:
MSMg01no085_f20.g1 PHD_FILE: MSMg01no085_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:36:03 2005
         (154 letters)



>mm_chr7_51640376_51640929
          Length = 554

 Score =  290 bits (150), Expect = 2e-83
 Identities = 153/154 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgagacatggtgcacacacagagagaagtgaagccaggtaggcaggggtgtgggcagaaa 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 354 cgagacatggtgcacacacagagagaagtgaagccagggaggcaggggtgtgggcagaaa 295

                                                                       
Query: 61  taccttccaatgagacacaggtagatcagaagagagagagaaaagatgctgaattccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 taccttccaatgagacacaggtagatcagaagagagagagaaaagatgctgaattccagg 235

                                             
Query: 121 ttggacaaccagacaatggctggagacctcagat 154
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 ttggacaaccagacaatggctggagacctcagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 554
Length adjustment: 8
Effective length of query: 146
Effective length of database: 546
Effective search space:    79716
Effective search space used:    79716
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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