BAC Information

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BAC

Clone NameMSMg01-086A10
Chromosome7 (Build37)
Map Location 116,336,883 - 116,337,110
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1
Downstream geneStk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086A10.T7 (MSMg01no086_a10.b1)MSMg01-086A10.TJ (MSMg01no086_a10.g1)
ACCAG305446AG305447
length672758
length of high quality
(start - end)
511 (49 - 559)228 (135 - 362)
definitionCHROMAT_FILE: MSMg01no086_a10.b1 PHD_FILE: MSMg01no086_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:35 2005CHROMAT_FILE: MSMg01no086_a10.g1 PHD_FILE: MSMg01no086_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCTATTCAGACGAGATCCGCGGAATTCACATGTTTGCTTACACAGAG
AAAATATGAATAGACAGCTAAATAAAATAAGACAATTTATTATATGAAAG
AAAAATTCAATAAAGAGAGGTTCTGGAAAAGTCAAGAAGAAATCTTGGAA
ATGAAAAGCTCAATAAATCAAATAAAAGGCTGAGTTAAAAGCTTCACCAA
TGACTGGATCAATGGGAAGAAGGCTTGAAGCAAGATTTATGGCTTAGAAC
ATTCAGACAGTATTACAAGAAAAATAAATTATAAACAGAACATGAATTAT
TTTTTGGGATAAGATTAAAAGACACACTTAGGAATCTTGGCATAGACTCA
GATATAGACATACAGAATAATGACATAGAAAAATCTATTCAGTGAAATGA
TCACATATAATCTCCCAAGTTGAGGGCAACATATGAATATTCAGACACAG
AAAGCATTAAGACTAAATGGACATGACCAGGAAAAGAACTTCCTCATGCC
ATATTATACCTAGAATGCCAAGAGTACAAAGAGGTGAGAACTGCAAGGTT
GCTTATAAAGGTAAACATGTTGGAATAACAGCAAATATTTGAGAAGAAAC
TCTAAAGGTCAGTAAGATATAGCATAATTTATTTCAAGTTCTACAAAATA
TTAACTCAACCTGTTTTATTAT
NNNNNNNCCCCNNNNCCCCCCTTNCCGNNCCCTCCCCTCCCTCCCCCCTC
TTCTCCTTCNCCGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTGTTCCAAATGCT
TAGAGAGGTGTATCTAGTTATTCCATTGGCCAGGCTCTGGGAGTGGGGGT
GGGGTGGGAAATCCTTACATAAGGAAAGCTGTGACAACATTTGGGAGCAG
CTACAGGCCAGATCACTACCACAGGCCAGACCACTGCTACCTTAGAGGAT
TGAGTTAGAGTCCGTGCCTATCAGCAGAGACCATGAGTTCAAAGACCCAT
TTAACTCTGTGTCCTGGGCAAGCTCATGTTGTTTCCTATGTAAAATGGGT
ACCTGTGTCTGAGTTCATGGTAATGCAGAAACTCTCACGGAAGCTTCAGA
ATTCACTAACGTGTATTTCTGTGCAACCTCCTAGGAATCGGTTGTCTGCT
TCCTACTAGCAACCGACTGCCTGATGCCCGGACCGTCCTACCTCCGGTTT
GGTCGCTCTGGGCCCTTGGCCCTCTACACCACTCCTGCCTACACACTATT
TCACTCTCATTAATAAGTCTTCACCTCTCTTCAGTTTTGAAATCCCCCCT
CCTTTTCTATTTCTGATCTCCAATCTTCATCCAAAGACATTCTGTCCGAC
ATGTCATCTTCAGTACCCCTTTTAGTCTTTTATCCACCTCTCCCTCTGTC
CTCCTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_a10.g1 MSMg01no086_a10.g1 CHROMAT_FILE:
MSMg01no086_a10.g1 PHD_FILE: MSMg01no086_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:35 2005
         (228 letters)



>mm_chr7_116336683_116337310
          Length = 628

 Score =  433 bits (224), Expect = e-126
 Identities = 227/228 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctgttccaaatgcttagagaggtgtatctagttattccattggccaggctctgggagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctgttccaaatgcttagagaggtgtatctagttattccattggccaggctctgggagt 260

                                                                       
Query: 61  gggggtggggtgggaaatccttacataaggaaagctgtgacaacatttgggagcagctac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggggtggggtgggaaatccttacataaggaaagctgtgacaacatttgggagcagctac 320

                                                                       
Query: 121 aggccagatcactaccacaggccagaccactgctaccttagaggattgagttagagtccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggccagatcactaccacaggccagaccactgctaccttagaggattgagttagagtccg 380

                                                           
Query: 181 tgcctatcagcagagaccatgagttcaaagacccatttaactctgtgt 228
           ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 tgcctatcagcagagaccatgagttcaaagacccacttaactctgtgt 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)