BAC Information

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BAC

Clone NameMSMg01-088J21
Chromosome7 (Build37)
Map Location 89,725,898 - 89,726,120
singlet/doubletsinglet
Overlap geneAdamtsl3
Upstream geneWhdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3
Downstream gene1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik, EG666160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088J21.T7 (MSMg01no088_j21.b1)MSMg01-088J21.TJ (MSMg01no088_j21.g1)
ACCAG307326AG307327
length765793
length of high quality
(start - end)
221 (183 - 403)223 (188 - 410)
definitionCHROMAT_FILE: MSMg01no088_j21.b1 PHD_FILE: MSMg01no088_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:09 2005CHROMAT_FILE: MSMg01no088_j21.g1 PHD_FILE: MSMg01no088_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTNNNNTTTTTTNTNNNNTTTTTNNNNCNTNTTTTTTTTTTTAATATT
NNNAAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCCTTCTGTCTTACTAGTAACATATATACTATAGATCTAGA
AATACAGCAACACTTCTTCAATTTGTCCCTAAAATTAGCAGATACACAAA
TCATTTATGATATCTGAGAAAGTATTAGAACTTATATTAAATTAATAATT
TATAAGACAGGCTTGGTGACACAGACTTGCAATCCCAGTTCCTCAGGGGC
CTAAGGCAGGAGAATCTCAAGGTTTGCTTGGGCTACAGAATAAATTCCAG
GCTAACCTGAACAATTTAGTGAGATTCTGTCTCAAATAAAAGTAGTGACG
GGGTTTGCTAGAGGTGTATTTTGCTGCCACAGCGCCTGTCTACTGAGTTG
GACTCCCAGGACTGCTTGTACCAAAATAGAAAAAGACAAAGTGAGAGTGA
GAGCACTTGATAGAAGTGTGGCGCTCAGGACCCTGTTCACAAGCTATCTC
ACCCTCTGTGCTCCCTTCCTTGCCTGGTATATAACTATTTCAACCCAACA
GTTGGGGGAGGGAAGGTTAGAGGTTTTTTTTTTACTTTTTTTTTCTAATG
CTCCTTTTTTTACACGAATTTTTCCTTGAACATCTTAAACTTTCATTACT
TGTATACAAAAATATATAACATATTTGCTCAAATACATTTCTATTAAATA
AATAATGTTTTGTTT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTNNNNTTA
TAAATANAATAATCTATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGACCCCATGGCTT
TCTCTTTATTATGTTTTCTGTGCAGTTTTTACCCGAATATTTTTTCATGT
TAATTAAAATGCTAAATTCTGACTTCTCCAAATGGTGCTAACCAACTTGA
GATAGCCTCATTTGAGTTCATAAATGAAAAATTTTTGCAGTATAGAGAGG
TGTCTTAAAGAGGTACCCCAGCAACTTCCTTTCAATAAAAACAGCAACAA
ACAAAACAAAACAGAAACCTGTTGTTTTAAGTGTACATGCATTTATTTAG
ATACTATGAGAAGGAGTGTTTTTTTTTTTACACACCGCCCAGGTGAATGC
GGTATGAGACCACTGAGCATTTTTACTGCCACTTCTATAAATATCTATAA
GGCAGAGGGTTTGCATGTGTACATGATTTAGCATAAGGTCTACTGTATTT
GAGTTCTCCTGTCTACTCGTCTTTTTCTCAGTTCAATTTCACATAAGCTT
TGATCTATTCATTCTGCCATTTGTTAATCTTTTCTTCCGGTCTTATAAAA
AATATCGTACATTTTAGTTATATAATTTGCATTCTGAAATTTTCCTTTCC
ATATCCACTCTTGATTATACCGCATATCTATTTTTTTATTTTACATAACA
CACCCTGTATATCTGTATTTGCGAATTATCTCTTATCCTTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_j21.g1 MSMg01no088_j21.g1 CHROMAT_FILE:
MSMg01no088_j21.g1 PHD_FILE: MSMg01no088_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:09 2005
         (223 letters)



>mm_chr7_89725698_89726320
          Length = 623

 Score =  408 bits (211), Expect = e-118
 Identities = 220/223 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattttttcatgttaattaaaatgctaaattctgacttctccaaatggtgctaaccaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattttttcatgttaattaaaatgctaaattctgacttctccaaatggtgctaaccaact 260

                                                                       
Query: 61  tgagatagcctcatttgagttcataaatgaaaaatttttgcagtatagagaggtgtctta 120
           ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 tgagatagccttatttgagttcataaatgaagaatttttgcagtatagagaggtgtctta 320

                                                                       
Query: 121 aagaggtaccccagcaacttcctttcaataaaaacagcaacaaacaaaacaaaacagaaa 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaggtaccccagcaacttcctctcaataaaaacagcaacaaacaaaacaaaacagaaa 380

                                                      
Query: 181 cctgttgttttaagtgtacatgcatttatttagatactatgag 223
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgttgttttaagtgtacatgcatttatttagatactatgag 423


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 623
Length adjustment: 9
Effective length of query: 214
Effective length of database: 614
Effective search space:   131396
Effective search space used:   131396
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)