BAC Information

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BAC

Clone NameMSMg01-089B02
Chromosome7 (Build37)
Map Location 139,906,575 - 140,075,123
singlet/doubletdoublet
Overlap geneA930008G19Rik, 2010208K18Rik, C430003P19Rik
Upstream geneGpr26, Cpxm2, 4631426J05Rik, LOC100043682, LOC100043683, Oat, Nkx1-2, 2310007H09Rik
Downstream geneZranb1, Ctbp2, LOC668747, 4930404H21Rik, LOC100043237, 2700050L05Rik, Mmp21, Uros, Bccip, Dhx32, LOC100043695, Fank1, Adam12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089B02.T7 (MSMg01no089_b02.b1)MSMg01-089B02.TJ (MSMg01no089_b02.g1)
ACCAG307661AG307662
length753685
length of high quality
(start - end)
319 (107 - 425)398 (77 - 474)
definitionCHROMAT_FILE: MSMg01no089_b02.b1 PHD_FILE: MSMg01no089_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:45 2005CHROMAT_FILE: MSMg01no089_b02.g1 PHD_FILE: MSMg01no089_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,906,575 - 139,906,889)(140,074,726 - 140,075,123)
sequence
TTTTTTTTTTTTTTTTTNTTTTCTCCTTCCTTTTTTTTTCCCCCACCTNC
GACATCNNNTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCACTGAGCTCACCTCTCAGGGACTGGGGACAGAAG
GAAGGCTACCAATGTCAGCCTTGCCAAGGCAGCCCCTGAGGTGGCAGAGG
TGTGGGTGATTCTTGGTGACATGGGAGAGCTGGTGGGCCCACCTTTCAGT
CAACACAACCACCAAATGCCTACCCAATATGGATGGCTTCTGGTCATTCC
TAACTATCCCCTGATCCCGAAAAATGGGACATGGATTATCCCAGAATCCC
TGCCAGTGCCCCAAATGGATTAAGGCCACACGGTCTGCTGTCACTACAAG
AGGTGTCTCCCGAACCTTCCCAAGCCTGGGCCACCGAGACCTGGGAGAGA
AGGCACGGAGTAAACTAAGTAAAGGAGGCTTTGGGTAACTCCCCAGAAGG
AACCTGAGCGAGGCTATAAGGGGGCTCATGCCCCCGGCATCCTACCTGAA
GGTTGCAGCTGGCCCAGCCCTACTGGAAAATGGCGGCTACCCAGTACTCC
TTAGGGAACAACGAGGAGGATACCAAACCGAAAACCTGTTTTTGGTTTAC
CGTATTTCCCATGGAACTGGCCGCAAGGCCAGCCTGTCCCCTGTGAAGTG
GCGGCCCAACTGTCCTTTCCACAATTTTGGTCCCTTACCGGTTGTATGGC
TGG
CCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGAATGTGAGTATTCGCTATGA
GGGGACTCTGCAGGATCAATCAAATTTTCATAATCACTGTCATCTGACTC
CTCCCCACTGTCTCCAGCTGCACTCTGGGAAGGAAGAAGATCTGCTCCAC
TTCCAGGGAACTTCAGTCCGCCACTGGTGGAAGCATAGCTGGAAGAGCCC
ACAGCCTGAGGACGGGGCATGAAGACACTCCTTTCCATGCGAGAATGGCT
CAGAGTACTTTCTTGATTGTTTGGGTGGAAATCAGAGTAAGGGGGCGGAG
GATCAGAGGGCTCCGTTTCTGCCAGAGTACTTCTCCCTTCAGCTGAAAAC
CCAGAATAGGGCATCCGAGGGCTGAACGCTGGCTCCAGACTTTCGGATGG
CATCTGTCTGCTTAACAGGGCCTGCTGCAATCCTGCACAGAAACAGGAAG
AATGTCTTAATGAGTCCTGTACCTTCATAGCTTTTTAGCTCCCCTTGTTA
AATGGTCCACTGGAATGATCTGGGAAGGATCAGCAATGCCTGTGAACTCC
CCCCTGCTAATATTTTACAAAGGTTTCCCCTACATTAATTTCTTTGCATC
TCAGGATTCATAATAACCAGTTTACACCGTTGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_b02.b1 MSMg01no089_b02.b1 CHROMAT_FILE:
MSMg01no089_b02.b1 PHD_FILE: MSMg01no089_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:45 2005
         (319 letters)



>mm_chr7_139906371_139907089
          Length = 719

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgagctcacctctcagggactggggacagaaggaaggctaccaatgtcagcc 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgagctcagctctcagggactggggacagaaggaaggctaccaatgtcagcc 264

                                                                       
Query: 65  ttgccaaggcagcccctgaggtggcagaggtgtgggtgattcttggtgacatgggagagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgccaaggcagcccctgaggtggcagaggtgtgggtgattcttggtgacatgggagagc 324

                                                                       
Query: 125 tggtgggcccacctttcagtcaacacaaccaccaaatgcctacccaatatggatggcttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggtgggcccacctttcagtcaacacaaccaccaaatgcctacccaatatggatggcttc 384

                                                                       
Query: 185 tggtcattcctaactatcccctgatcccgaaaaatgggacatggattatcccagaatccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggtcattcctaactatcccctgatcccgaaaaatgggacatggattatcccagaatccc 444

                                                                       
Query: 245 tgccagtgccccaaatggattaaggccacacggtctgctgtcactacaagaggtgtctcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgccagtgccccaaatggattaaggccacacggtctgctgtcactacaagaggtgtctcc 504

                          
Query: 305 cgaaccttcccaagc 319
           |||||||||||||||
Sbjct: 505 cgaaccttcccaagc 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no089_b02.g1 MSMg01no089_b02.g1 CHROMAT_FILE:
MSMg01no089_b02.g1 PHD_FILE: MSMg01no089_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:45 2005
         (398 letters)



>mm_chr7_140074526_140075323
          Length = 798

 Score =  754 bits (390), Expect = 0.0
 Identities = 396/398 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgaatgtgagtattcgctatgaggggactctgcaggatcaatcaaattttcataatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tttgaatgtgagtattcgctatgaggggactctgcaggatcaatcaaattttcataatca 539

                                                                       
Query: 61  ctgtcatctgactcctccccactgtctccagctgcactctgggaaggaagaagatctgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ctgtcatctgactcctccccactgtctccagctgcactctgggaaggaagaagatctgct 479

                                                                       
Query: 121 ccacttccagggaacttcagtccgccactggtggaagcatagctggaagagcccacagcc 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ccacttccagtgaacttcagtccgccactggtggaagcatagctggaagagcccacagcc 419

                                                                       
Query: 181 tgaggacggggcatgaagacactcctttccatgcgagaatggctcagagtactttcttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tgaggacggggcatgaagacactcctttccatgcgagaatggctcagagtactttcttga 359

                                                                       
Query: 241 ttgtttgggtggaaatcagagtaagggggcggaggatcagagggctccgtttctgccaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttgtttgggtggaaatcagagtaagggggcggaggatcagagggctccgtttctgccaga 299

                                                                       
Query: 301 gtacttctcccttcagctgaaaacccagaatagggcatccgagggctgaacgctggctcc 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 298 gtacttctcccttcagctgaaaacccagaataggacatccgagggctgaacgctggctcc 239

                                                 
Query: 361 agactttcggatggcatctgtctgcttaacagggcctg 398
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 agactttcggatggcatctgtctgcttaacagggcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)