BAC Information

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BAC

Clone NameMSMg01-089E19
Chromosome7 (Build37)
Map Location 70,200,169 - 70,200,468
singlet/doubletsinglet
Overlap genenone
Upstream geneNdn, Magel2, Mkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251
Downstream geneChrna7, Otud7a, LOC545971, LOC100041386, LOC665083, Klf13, E030018B13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089E19.T7 (MSMg01no089_e19.b1)MSMg01-089E19.TJ (MSMg01no089_e19.g1)
ACCAG307835AG307836
length726717
length of high quality
(start - end)
375 (46 - 420)290 (74 - 363)
definitionCHROMAT_FILE: MSMg01no089_e19.b1 PHD_FILE: MSMg01no089_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:03 2005CHROMAT_FILE: MSMg01no089_e19.g1 PHD_FILE: MSMg01no089_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAG
TAGCCAACATCAAAGTAAATGGAGACCAGCTGGAAGCAATCCCACTAAAA
TCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGT
ACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGA
TACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATG
ATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCT
GATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGT
CAATGGTCTTTCTCTATACCAAGAATAAACAGGCTGAGAAAGAAATTAGG
GAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGT
GACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAATCTC
TGAAGAAAGAAATTAAGGAAGATCTCAGAAGATGGAAAGATCTCCCATGC
TCATGGATTGTCAGGATCAACATCGCAAAAACGCTTATCTTGCCATAAGC
AATCTACAGACCCCATGCAATCCCCATCAAAATTCCAACCTCAATTCTTC
CACGAATTGTAATGACCCCCCCGCAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGAATGGGAGCCAGATTAAAATTTGA
AATTGCATCTTCCAAACTTATACCCTGCAGACCCTCTCAGCAGAAGAAAC
TGGGTTGGCTCAGCTTGTTCAAAGATTCCTTAGTTCTGCCTTTGAGCTTC
ATGGTGGAGGTAAATAAGGGTAAAGGGAAAAAAGCTTATCTAATTTCCTC
CTGCAACTTGGAAGCAGAGTAGAAAGAAGCCAGCATTTGAAGACAGGTCA
CAATTGCAATTCCCCTGAGAACCAGCCTTGTATCCCCATCATTTGTGAGT
TGAGAAAGGGTGACAGCCGAAAGGGCCTTTAAGGACCTTGGTATTCAGGC
TGGCGAATTCCTCCTCACCACCAATGCTGAACGTGGCAGAACTTCCTTGG
AATAGTGTTGAATCAGTGAGTTTCAATGAAACAGCCCCCACAGGCACAAT
ATTTAGCGATTTCAGCCTGCATTATTTATTGACTGTGGACCATTTGGGGA
GAGTTTAACATTTTATTAATACAGCACTGGCTCACTGTAGAAACTTGTAC
CCACTGACAAATCTCCCTGAAGCATCCCCCATAATATCTACAGTGCACCT
TGACGACTAATCAAAGTCTATGTTATCCTGCCCACGTAGCTATTGTTGTG
CCTTCCTACATCCTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_e19.g1 MSMg01no089_e19.g1 CHROMAT_FILE:
MSMg01no089_e19.g1 PHD_FILE: MSMg01no089_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:03 2005
         (290 letters)



>mm_chr7_70199819_70200508
          Length = 690

 Score =  420 bits (217), Expect = e-122
 Identities = 275/301 (91%), Gaps = 12/301 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaatgggagccagattaaaatttgaaattgcatcttccaaacttataccctgcagacc 60
           ||||||| |||||||||| |||||||||||||||||||||||||| |||| |||||||||
Sbjct: 650 cagaatgagagccagattcaaatttgaaattgcatcttccaaactaatactctgcagacc 591

                                                                       
Query: 61  ctctcagcagaagaaactgggttggctcagcttgttcaaagattccttagttctgccttt 120
           ||||||||||||||||| || ||||||||||||||||||||||| || ||||||||||||
Sbjct: 590 ctctcagcagaagaaaccggattggctcagcttgttcaaagatttctcagttctgccttt 531

                                                                       
Query: 121 gagcttcatggtggaggtaaataagggtaa-----------agggaaaaaagcttatcta 169
           || ||||||||| |||||||||||||||||           |||||||||||||||||||
Sbjct: 530 gatcttcatggt-gaggtaaataagggtaagagtgatcttcagggaaaaaagcttatcta 472

                                                                       
Query: 170 atttcctcctgcaacttggaagcagagtagaaagaagccagcatttgaagacaggtcaca 229
           |||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 471 atttcctcctgcaactgggaagcagagtggaaaggagccagcatttgaagacaggtcaca 412

                                                                       
Query: 230 attgcaattcccctgagaaccagccttgtatccccatcatttgtgagttgagaaagggtg 289
           ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 411 attgcaattcccctgagaaccagccttgtgtccccatcatttgtgagctgagaaagggtg 352

            
Query: 290 a 290
           |
Sbjct: 351 a 351


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)