BAC Information

Click to search

BAC

Clone NameMSMg01-089L02
Chromosome7 (Build37)
Map Location 53,055,209 - 53,055,570
singlet/doubletsinglet
Overlap geneLmtk3
Upstream geneAtf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963
Downstream genePscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef, Tph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089L02.T7 (MSMg01no089_l02.b1)MSMg01-089L02.TJ (MSMg01no089_l02.g1)
ACCAG308125AG308126
length786698
length of high quality
(start - end)		365 (123 - 487)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no089_l02.b1 PHD_FILE: MSMg01no089_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:35 2005CHROMAT_FILE: MSMg01no089_l02.g1 PHD_FILE: MSMg01no089_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCNC
CCCCCCNNNNCTTCTTCCATATCCCTTACTATXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCAGAGAATCCGCGGAATTCCTAAATTCATCGCGCAAG
ACGCTGTTCTAAACCCCGCAGCACCACCTCCAAGATCTTGGCGGCAGAGA
TCCAAACCTATGTCTTGGAGCTAACAGCCTGCTCCTGTAGCCTCCCAACC
TCTAACTCCAGCCACGCACCAAGGGACAATTATCCCAGTCCCACTCAAAC
TCTCAAAGTCCCACCTTGAGTCTGACAAGGTGGGGACCCCCTTAATTCCA
GCGCTCAGGAGACAGGGACAGGTGGGTCTCTTAAGTTTGAGACCAGCCTG
GTGTACAAAGTGAGTTCCAGGACAGTTAGGGTTACACAGAGAAACCAAGA
TGCACATGGGTCTCTGAGTTCTAGGCCACCCTTCTCTACTAAGTTCCAGC
ACAGTCAGAGTTATACAAAGAAATCCTGTCTCAAACAAACAAACACAATT
GAAAAGTCCCATTTTGGCCCTGGCAGTGTTAGCGCACGCCTTTTAATCCC
AGCATTTGCCAGGCTCACCCCATGCCCATTTCCGAAGTCGAGGCCAAGTT
TGCCTCTATAAAGTGGATTTTTCAGGATTACCCCGTGTCTATTAGAGAAA
CCCTTGTCTCCTATAAAGCCCTAAAATTTTTAATTTACCCCACCCTCGCC
CCCATTTTGCAATCCTTTGGTCCCTTTTGACTTTCG

CCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAGTCTGGCCTTGAGCTCACAAA
TGAGTCACCTATCCCTGTCTTCTGAGTTGCTGGGACTAAAGGTGGTCACG
AGCACACTAGGCCTCTACTTTTGTCTGCACGTGTATATATGTGCACCATG
TCCATGACGTGCCAGAAGTGGAGGGCAGCTCTTCTGAAATGGGACTTACA
GGCCACGTAGGTGCTGGGGAGCAAACTAGTTCTCAGCTGGGCCCTCTGCA
AGAGCAGCAATTGTTCTTAACTGCTAAGCCTTCACCCCAGGCCCTTCACT
TCACTGATTTCTATCTTATCTACACCACTGCCCATTGAACCCAGAGAGTT
GCACATGCCAGGCAAACACTGCCGCCGACCTGCATCTCCAGACCCCTTTT
ACTTTTTCATTTTGAGATAAGAGTTTCACCATGTTTACCAATCTTGCCTT
GCACTTTTGAATCCTCTTGCCTCAACCTCCCTAAAAAACTGTTATGCCTG
GCCTGCCCTATGGGCCCCAGCTGTGACCACCAGATGTCTAACTTTGGGGA
CTTCCCCCTATCTTCCTGGCAGTACTTTAACGGACTGTACTACCCCTCCC
CTGACTCCGGTTTAGTTCTACCATCTTCTTCAGCACTAACAATTGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_l02.b1 MSMg01no089_l02.b1 CHROMAT_FILE:
MSMg01no089_l02.b1 PHD_FILE: MSMg01no089_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:35 2005
         (365 letters)



>mm_chr7_53055175_53055939
          Length = 765

 Score =  646 bits (334), Expect = 0.0
 Identities = 355/362 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctaaattcatcgcgcaagacgctgttctaaaccccgcagcaccacctccaaga 63
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ggaattcctaaattcagcgagcaagacgctgttctaaaccccgcagcaccacctccaaga 337

                                                                       
Query: 64  tcttggcggcagagatccaaacctatgtcttggagctaacagcctgctcctgtagcctcc 123
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 336 tcttggcggcagagatccaaacctatgtcttggagctaacagcctggtcctgtagcctcc 277

                                                                       
Query: 124 caacctctaactccagccacgcaccaagggacaattatcccagtcccactcaaactctca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 caacctctaactccagccacgcaccaagggacaattatcccagtcccactcaaactctca 217

                                                                       
Query: 184 aagtcccaccttgagtctgacaaggtggggacccccttaattccagcgctcaggagacag 243
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 aagtcccaccttgagtctggcaaggtggggacccccttaattccagcgctcaggagacag 157

                                                                       
Query: 244 ggacaggtgggtctcttaagtttgagaccagcctggtgtacaaagtgagttccaggacag 303
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 ggtcaggtgggtctcttaagtttgagaccagcctggtgtacaaagtgagttccaggacag 97

                                                                       
Query: 304 ttagggttacacagagaaaccaagatgcacatgggtctctgagttctaggccacccttct 363
           ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 96  ttagggttatacagagaaaccaagatgcacatgggtctccgagttctaggccacccttct 37

             
Query: 364 ct 365
           ||
Sbjct: 36  ct 35


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |