BAC Information

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BAC

Clone NameMSMg01-090A17
Chromosome7 (Build37)
Map Location 62,264,148 - 62,264,430
singlet/doubletsinglet
Overlap geneLuzp2
Upstream geneMrps33p, LOC622146
Downstream geneLOC668796, Siglech, Tubgcp5, Cyfip1, Nipa2, Nipa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090A17.T7 (MSMg01no090_a17.b1)MSMg01-090A17.TJ (MSMg01no090_a17.g1)
ACCAG308381AG308382
length811713
length of high quality
(start - end)
78 (43 - 120)285 (73 - 357)
definitionCHROMAT_FILE: MSMg01no090_a17.b1 PHD_FILE: MSMg01no090_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:04 2005CHROMAT_FILE: MSMg01no090_a17.g1 PHD_FILE: MSMg01no090_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTGTTTATGTCTGCAATCAAGTTTTAATTGGATACTTTGGGTATTTGG
GGGGGGTTATATCTATTTTGGGGGGCCCTNNNNNCCCCATANCNNNCCAC
ACCAATAANACATTCCNCTTTAATAAAAAAATAAAATAATAATTCTATAA
TAAACATACATACACAACAATTATTTTACCCATCATCGCATTCTCCTATA
TTTTTCTCTTCCCCCTCCCCTTTACCCCTTAATAACACTTACCACCTCGC
CACCCACCACCCCTGACCGCCCGAAAAACACTTGTTTTCTCTGCGTGCTA
CCTCTTTGGGGTTAAGGGAAAGAAGATTTTTTTTTTTTCTCCCGGAGCGN
GGGCCCCTTTTGTAAAAGTATGAGGAATAGGGTAAGATTGCTGCGCCCAA
AAAAAAAAAAAGAAAAAGCGGGGGGGGGCGGGGGAGGTGCATAGACCCAG
TAATAACAAGTCCCATATATAAACATAATGTATCCAAACATTGCCAAACC
ACAAAAAAACGCTCCTTTTTACCCCTCACCTATTACGTAGTAGGCGTCGC
GTATAGCTGTGATATACGCCAGTGCGGGTAATCATCTCGGCAGTGCATAG
AAGCCACGATCTCGACAAGCCTATAAGATAGACCGGGATCGGGTGCGTAC
TAATTTGAGAGTCGCTGGCCGTAGAGGCGCAGGTCATTACGAGGTACAGT
GATATATGGAGGGAACACGCTGTAATATAGTATCTGCCCCTGCGGCGCCA
GGTAACCGCCA
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATAATTTAATGAAATTGGCTTCTCTAAG
ATCATAGCTTGTATCCATGTTCTTGAGTATAAACACAATCTGAGGCTACT
CTGTGCTTTATCCTATACCCAAAAGTGTTCTTGGAGGTTTGGATAATTGT
CTATAAATCAATACATTTCTCTTTTTTAATAACTGCCATGCAGAAATAGG
AGATTAATCTTATTAAGGACTCTGCATCTATGATTTTCTCACTACTCTAA
GAGCCTATGCTTCTAAGAATCTGCAATCTTCAGGACCTCTCATTCTTTCA
TAGAGTGTCTTTAACCCGACCAACTTAGAATAAGAACACTTAGGAAGTTA
ATAAGTTAAGAAGTATGCAGGTTAAGAAGTGAAGAACAGAAATCTCAACC
TTTGATACTGCTAGTGATTTCTCTTCTTTATTTTTTCCTTTTCCTTTATT
CTTCTCTCATACAATACATCCCTACCACAGCCTCCCTCTCCTCCAATGCC
ATGCCCCCCAACTTCCATCTCCTCTACATCTACTCCTCCTTCACTTCTCT
TCAGAAAAGAGCAGGCCTCACAAGACTACCAACTGAGGACAGCACAAGTA
GATGCAATAAAACTAACCACAAAGCTTCATATAGAGGCTGGACAAGGCAG
CCCAGTAGGAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_a17.g1 MSMg01no090_a17.g1 CHROMAT_FILE:
MSMg01no090_a17.g1 PHD_FILE: MSMg01no090_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:04 2005
         (285 letters)



>mm_chr7_62263948_62264630
          Length = 683

 Score =  516 bits (267), Expect = e-151
 Identities = 280/285 (98%), Gaps = 2/285 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataatttaatgaaattggcttctctaagatcatagcttgtatccatgttcttgagtataa 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 483 ataatttaatgaaattggcttctctaagatcatagcttgtattcatgttcttgagtataa 424

                                                                       
Query: 61  acacaatctgaggctactctgtgctttatcctatacccaaaagtgttcttggaggtttgg 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 acataatctgaggctactctgtgctttatcctatacccaaaagtgttcttggaggtttgg 364

                                                                       
Query: 121 ataattgtctataaatcaatacatttctcttttttaataactgccatgcagaaataggag 180
           ||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||
Sbjct: 363 ataattgtctataaatcaataaatt--tcttttttaataactgccatgcagaaataggag 306

                                                                       
Query: 181 attaatcttattaaggactctgcatctatgattttctcactactctaagagcctatgctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 attaatcttattaaggactctgcatctatgattttctcactactctaagagcctatgctt 246

                                                        
Query: 241 ctaagaatctgcaatcttcaggacctctcattctttcatagagtg 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ctaagaatctgcaatcttcaggacctctcattctttcatagagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 683
Length adjustment: 9
Effective length of query: 276
Effective length of database: 674
Effective search space:   186024
Effective search space used:   186024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)