BAC Information

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BAC

Clone NameMSMg01-090K15
Chromosome7 (Build37)
Map Location 35,772,473 - 35,772,751
singlet/doubletsinglet
Overlap genePepd
Upstream geneLOC100043865, Abpb, Abpa, LOC100043866, LOC100043867, LOC100043868, Wtip, Sae2, LOC100043410, Pdcd2l, Gpi1, 4931406P16Rik, EG619734, Lsm14a, LOC668460, LOC668464, Kctd15, Chst8
Downstream geneCebpg, Cebpa, Slc7a10, Wdr88, Gpatch1, Rhpn2, C230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090K15.T7 (MSMg01no090_k15.b1)MSMg01-090K15.TJ (MSMg01no090_k15.g1)
ACCAG308834AG308835
length795777
length of high quality
(start - end)
312 (106 - 417)279 (132 - 410)
definitionCHROMAT_FILE: MSMg01no090_k15.b1 PHD_FILE: MSMg01no090_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:53 2005CHROMAT_FILE: MSMg01no090_k15.g1 PHD_FILE: MSMg01no090_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNCCCTT
TTTTTTNNTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCAGTTACTCGCCAGGTTACATTCCACTGTGTGCAGA
GCACGTTATCTTTATCTGTTCATTTATTGATGGAGACCAGGGTTATTTCC
ACCTTCTCTGCTGTTGTTGAACAGTTGGTGCACAAATATCTACCTTCTTC
TCTATTTTCCAATATTTTAGATACCCAAGAACAAAATCATTGGTCAATAT
ATGGGAACTCTGTGTTAAGCTTAAAAACTCTTTTCTTTTTCTTTCATTTT
ACGTGTATGAGAGATTATCCTGCATGCTCGTCTGTGTACCACGTGTGAGC
AGTGCCTGTGGATGCCATTATTTATGCCGCCCCCCGCCCCATTGGAGCTA
CAGAGGTTTGTGAGCTGTCATGCCCCCCCGCTGAAAAATGAAACCCAGTT
CTCTGTAAGAGCATTCATTACTCTTAATCACTGAACCAACTCTATGTTTC
CTCAACCTTTCTTTTGAGAAGGAGAACCTATCCTATTCTACGCTCTTTGT
AATTAAATTGCCTTCTTAATTTTAAATCTTGTTAATTAATACTGATTAAT
TTGGACTATATTATTTATAAAACAATACAATGATGGTCTCATGAAATTTT
TACTCCATAGCATACTACTTACACTTTCAATTCAATACCAATATTTCTTA
CCACTTCAATATATTTTATTTTTCTCAACCCCCCATTTTATCCAC
TTTTTTTTTTTNNNTTTTTTNTTTTTTTTTTTTTTTTTTTNNNCACACCA
NNNCCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTGAAGGCAGCTGGCTA
GGTCTGCAAGCAGCAGGCAATCGCTACAGGCCCTTTCCTATACCCAAACC
CCTAGCAGGCTCCTAAAGTTGCTATAACCCAGGACACCTGACAAATATAT
TCATTATCCTGCAGGCAGGACAGGATCCTGATAGTACAGTCCCCCGGCTG
GAGGCCTCTGAACAATACTGGGTACCATCCACCACCATCAACAGCTGGTT
CCCTCGGGTGTCAGAGCCTCTTCATACTTTCCAGGGAGAGGGGAGTCTCG
CACTCTGTGTGTTTGTTGTTCCCCCAAGCTGCCCCTAATAAGGGGGAGGT
GGTCAGCAAGCTGACTGACCCCCACAGAAAAAAATCATCTACTTGCTCTA
GGACAGCCATGAGAGTATGGATCCCACCCTATGGCGTGCTCTTGGACAGA
TGCTGCAAGAACCCAGAGGGCTCACAAGATTCCCCGTCTATGCCCCTTGA
CTGAGTGAAGCCTAACACAGCCTGCACTGTGGCCAGGGTCAGAAGTTAGC
ATGGTCTGAGAGGCTCCACTGACCAGATACTGGGGAATCTCCCGTAGTAA
TCCTCTTCCCATCTCTGTCCAGAGAGATTACAATACACCCCTCCAGGTTT
TCTGAAGCTTAGCCGCCCACCTACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_k15.g1 MSMg01no090_k15.g1 CHROMAT_FILE:
MSMg01no090_k15.g1 PHD_FILE: MSMg01no090_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:53 2005
         (279 letters)



>mm_chr7_35772273_35772951
          Length = 679

 Score =  532 bits (275), Expect = e-155
 Identities = 278/279 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtgaaggcagctggctaggtctgcaagcagcaggcaatcgctacaggccctttcctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 atgtgaaggcagctggctaggtctgcaagcagcaggcaatcgctacaggccctttcctat 420

                                                                       
Query: 61  acccaaacccctagcaggctcctaaagttgctataacccaggacacctgacaaatatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 acccaaacccctagcaggctcctaaagttgctataacccaggacacctgacaaatatatt 360

                                                                       
Query: 121 cattatcctgcaggcaggacaggatcctgatagtacagtcccccggctggaggcctctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cattatcctgcaggcaggacaggatcctgatagtacagtcccccggctggaggcctctga 300

                                                                       
Query: 181 acaatactgggtaccatccaccaccatcaacagctggttccctcgggtgtcagagcctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 acaatactgggtaccatccaccaccatcaacagctggttccctcgggtgtcagagcctct 240

                                                  
Query: 241 tcatactttccagggagaggggagtctcgcactctgtgt 279
           ||| |||||||||||||||||||||||||||||||||||
Sbjct: 239 tcacactttccagggagaggggagtctcgcactctgtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)