BAC Information

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BAC

Clone NameMSMg01-092G20
Chromosome7 (Build37)
Map Location 109,555,396 - 109,555,906
singlet/doubletsinglet
Overlap geneStim1
Upstream geneCentd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1, Rhog
Downstream geneRrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092G20.T7 (MSMg01no092_g20.b1)MSMg01-092G20.TJ (MSMg01no092_g20.g1)
ACCAG310118AG310119
length727689
length of high quality
(start - end)		---511 (74 - 584)
definitionCHROMAT_FILE: MSMg01no092_g20.b1 PHD_FILE: MSMg01no092_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:17 2005CHROMAT_FILE: MSMg01no092_g20.g1 PHD_FILE: MSMg01no092_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCAAAATTTGAGGCGCTAATACGAGTCCTATTTCAAGAGAAAAGNGGAA
NNGAGAGGTTTCCAGACCAAAGNAAGCGGAGAAGAAGGNCAGGGAANNCC
GGAAAGAAGAAATTTTGCCCGCAGGACACGGGAGGAGACCNAGAGAAAGG
NNGGAGNAGAACGCAGGGAGGCAGCGGGGACCCACCAGCGCGCGACACCA
CACCACACACAGCACAGAAAGGGCGCGGAACAGAAAGAGACACAGCTGGG
GCACACCCGAACACACCACGCAACAAAGCAACCGAAAGCACACAAGCAAA
AAACGAACGGATGTTTTTTTTTTCAAAAGAGAACAGCAATAGAAACGAAG
GATTTTANGGTGGGTTTCCCGAGCAAAACCCCCCATATAATGTAAGNGGG
GGGGGGGGGGGGGGGGGGGCCCCAACACCCCCATTCTCAAATAGGGCTTC
TCGCTCTCGGCTCTCTCTCTCCTTATTACTTTTTTGCCCGCGCTAATAAC
AACCAAATTATCGTATCTTTTTTCTCCCCATTATCTTCTTTCTATCCCTT
CCTCCGTTTTATCATCCCGTTCTTTCCTTCCACATCTAACTATATCCGAC
TCCACTTCAATTAGTTTATGACCCACCTTATATATTTTCCTTTACCGTTT
CCGATTATATAACACTCTTTATCTTGTTTTTTTTTTGTGTCGTACCATTC
CAATCATTCATCCTTTAAGTCTGCTCG

NCGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATAGAGTCACTAATTCATCTAAACAG
CATTAATTCATGCATCTTCATTTTGATCCATGGGGAAATTTGCCCAATAG
GGTGGGCTGGTGCCCAGGAATCATTGGACTATGTAATAATGGCAAGAAGG
GCATATCAACAGTAAGAAGCAATCCTGGGAAGAAGTCTCTAGGGCTGTGC
CTCTCCAGAGTACACCCATCACAGCCATGCAAAATTGTGGGTCATCTCCA
GGAAACTCACTTGCTTGCCATAGCCTTTCTTAGGTGGCTTCTGTCAATGA
ACTATTTTAGATAAAATCCTACTATCCTTTGCTTTATTTTCCTATATGGA
AGGATTGAACCGCGCCCCTCTGCAAGAACAAGTGCTCTTAACTGCTGAGC
CATCTCTCCAGTCCTTCATCCATTTCTTTAATCCACACTTCACTGATGCT
ATTAAGTTTTTGTACTGGAAACCAGCTTCTAGAAAGCTTGGCATTATGTG
GGCCATGCTGAAAGTTGGTTAAATTGGATGGGTGGTTCTCAGCACTGATA
ACATTTTATAATAATTAAAAAAAAAAGCATTATCTTGGCCTGAGATGTAA
CCATGCTCTTACCTAGATTACTGAGTTTGATCCCTAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_g20.g1 MSMg01no092_g20.g1 CHROMAT_FILE:
MSMg01no092_g20.g1 PHD_FILE: MSMg01no092_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:17 2005
         (511 letters)



>mm_chr7_109555196_109556106
          Length = 911

 Score =  888 bits (459), Expect = 0.0
 Identities = 498/511 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatagagtcactaattcatctaaacagcattaattcatgcatcttcattttgatccatgg 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 tatagagtcactaattcatctaaatagcattaattcatgcatcttcattttgatccatgg 260

                                                                       
Query: 61  ggaaatttgcccaatagggtgggctggtgcccaggaatcattggactatgtaataatggc 120
            |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 261 agaaatttgcccaatagggtgggctggtgcccaggaaccactggactatgtaataatggc 320

                                                                       
Query: 121 aagaagggcatatcaacagtaagaagcaatcctgggaagaagtctctagggctgtgcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaagggcatatcaacagtaagaagcaatcctgggaagaagtctctagggctgtgcctc 380

                                                                       
Query: 181 tccagagtacacccatcacagccatgcaaaattgtgggtcatctccaggaaactcacttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccagagtacacccatcacagccatgcaaaattgtgggtcatctccaggaaactcacttg 440

                                                                       
Query: 241 cttgccatagcctttcttaggtggcttctgtcaatgaactattttagataaaatcctact 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 cttgccatagcctttcttaggtggcttctgtcaatgaattattttagataaaatcctact 500

                                                                       
Query: 301 atcctttgctttattttcctatatggaaggattgaaccgcgcccctctgcaagaacaagt 360
           |||||||| |||||||||||||||||||||||||||||| |  |||||| ||||||||||
Sbjct: 501 atcctttgttttattttcctatatggaaggattgaaccgtggtcctctgtaagaacaagt 560

                                                                       
Query: 361 gctcttaactgctgagccatctctccagtccttcatccatttctttaatccacacttcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 gctcttaactgctgagccatctctccagtccttcatccatttctttaatccacgcttcac 620

                                                                       
Query: 421 tgatgctattaagtttttgtactggaaaccagcttctagaaagcttggcattatgtgggc 480
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggtgctattaagtttttgtactggaaaccagcttctagaaagcttggcattatgtgggc 680

                                          
Query: 481 catgctgaaagttggttaaattggatgggtg 511
           |||||||||| ||||||||||||||||||||
Sbjct: 681 catgctgaaaattggttaaattggatgggtg 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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