Query= MSMg01no092_j20.b1 MSMg01no092_j20.b1 CHROMAT_FILE:
MSMg01no092_j20.b1 PHD_FILE: MSMg01no092_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:32 2005
(543 letters)
>mm_chr7_87449660_87450601
Length = 942
Score = 915 bits (473), Expect = 0.0
Identities = 518/535 (96%), Gaps = 6/535 (1%)
Strand = Plus / Minus
Query: 9 ggaattcagagattcacctgcctctgcctactgagtgctaggtttaaaggtgtgtgttca 68
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 780 ggaattcagagattcacctgcctctgcctactgagtgctaggtttaaagctgtgtgttca 721
Query: 69 aactttgaattctctattaaacattaggctaattcaaacggctaatactatttcaactga 128
||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 720 aactttgaattat-tattaaacattaggctaattcaaatggctaatactatttcaactga 662
Query: 129 aattttagctttatattctaagaatattacatttcttattcacacaatagatagcttgga 188
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aattttaactttatattctaagaatattacatttcttattcacacaatagatagcttgga 602
Query: 189 ctctaaataaataaataagtaaataaggccagcactgtggatggggctcagtgatacatt 248
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 601 ctc----taaataaataagtaaataaggccagcactgtggatagggctcagtgatacatt 546
Query: 249 tgtctaggattcatgagactgcaaggtttgaatttaacctctaccactaaaaaagggaaa 308
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tgtctaggattcataagactgcaaggtttgaatttaacctctaccactaaaaaagggaaa 486
Query: 309 ataggcacgagggagatagcacagtcagtaaagggtttgccagaacaagggtaaaaaccc 368
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 485 ataggcacgagggagatagcacagtcagtaaagggtttgccagaac-atggtaaaaacct 427
Query: 369 gagtgtgcgcatgcctggtagggcatgcttgtaatcttagccctggagaagtgagacaga 428
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gagtgtgtgcatgcctggtagagcatgcttgtaatcttagccctggagaagtgagacaga 367
Query: 429 cctctacggctcaccagctgacaagcctagccgagtaagtgagcactagtccaattgaga 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cctctacggctcaccagctgacaagcctagccgagtaagtgagcactagtccaattgaga 307
Query: 489 acttgtctcaacaaggtgtacagctctagtagtgacactggcagttgacctttga 543
||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 306 acttgtctcaacaaggtgtacagctctagtagtgacattggcagttgacctttga 252
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 942
Length adjustment: 10
Effective length of query: 533
Effective length of database: 932
Effective search space: 496756
Effective search space used: 496756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no092_j20.g1 MSMg01no092_j20.g1 CHROMAT_FILE:
MSMg01no092_j20.g1 PHD_FILE: MSMg01no092_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:32 2005
(507 letters)
>mm_chr7_87359154_87360060
Length = 907
Score = 837 bits (433), Expect = 0.0
Identities = 496/545 (91%), Gaps = 45/545 (8%)
Strand = Plus / Plus
Query: 1 caggacagcaaaaactacacagaaaaacactgtctttaaaagaccacaaaagacagacag 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 170 caggacagcaaaaactacacagaaaaacactgtctttaaaagaccaaaaaagacagacag 229
Query: 61 acagacatttatatagtgcaaagactatttagaggaaggtaaggaactggaccgtgacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 acagacatttatatagtgcaaagactatttagaggaaggtaaggaactggaccgtgacat 289
Query: 121 acccagacactaagcaggactttgggtttcactctgagtgaatgaatcgttttggaaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 acccagacactaagcaggactttgggtttcactctgagtgaatgaatcgttttggaaacc 349
Query: 181 agtagaaagcttagcagagaagcggcatggccgtgtggt--------------------- 219
|||||||||||||||||||||||||||||||||||||||
Sbjct: 350 agtagaaagcttagcagagaagcggcatggccgtgtggttttgtactgttttgtggaact 409
Query: 220 -----------cca------cacgagttagacaagtgctaaaccactgagccacatccct 262
||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tccgattaatcccagggtctcacgagttagacaagtgctaaaccactgagccacatccct 469
Query: 263 gaccctctgcttctgaggcaggttctctctgtcacctagactggccttttcacccaggct 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 470 gaccctctgcttctgaggcaggttctctctgtcacctagactggccttttcacccagact 529
Query: 323 ggactggaacttgggatccttttcattcagccccccccccccccccgagtagctggaaat 382
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 530 ggactggaacttgggatcctcttcattcagccccccccc-------gagtagctggaaat 582
Query: 383 agagacgtgccaccaggcctgtcttgcctgtgttctaaaaggctgtccttgagccaggta 442
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 583 agagacgtgccaccaggcctgtcttgcctgtgttctaaaaggctgtccttgagccaggca 642
Query: 443 tgcttgtgtctccttgtaattctagtacttgtaaggcagaggattattcattccaggtga 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tgcttgtgtctccttgtaattctagtacttgtaaggcagaggattattcattccaggtga 702
Query: 503 gcctg 507
|||||
Sbjct: 703 gcctg 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
