BAC Information

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BAC

Clone NameMSMg01-093A17
Chromosome7 (Build37)
Map Location 51,233,469 - 51,233,683
singlet/doubletsinglet
Overlap geneKlk1b9
Upstream geneLOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1
Downstream geneKlk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093A17.T7 (MSMg01no093_a17.b1)MSMg01-093A17.TJ (MSMg01no093_a17.g1)
ACCAG310587AG310588
length1,2501,248
length of high quality
(start - end)		216 (120 - 335)216 (134 - 349)
definitionCHROMAT_FILE: MSMg01no093_a17.b1 PHD_FILE: MSMg01no093_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:09 2005CHROMAT_FILE: MSMg01no093_a17.g1 PHD_FILE: MSMg01no093_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:09 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TATGCGCGCTATAXXXXXXXXXXXXXXXXXXXTCCGCGGAATTCCATCCT
TTGACTCACCCCTTAAAAGAAGAGAACTGATTCTGCAAGTTGTGCTCTGA
CCCTTAAAAGTATGCCCCAGCATGCATGTACCCACAAATATATACATACC
TACATACATGTATACTTACATAACCCCATACATACATGTATACTTACATA
GGTACATATACACATACCAAACAAAATAAATATAATAATTTTGATAATTT
TTAAAATATTTTATCTTTATTTTTAGTTAAATGTGTGTTGCTGTGTGTGG
CTATGCGCACATGAGTGTAGTGTCCAAGGAAGCCAGAATAGGCCGACAGA
GCCCCCTATAAATGGAGTCACAGGCATTTGTGAGCCCCTTTTTTTTAACC
AGTCTTGATTGTAACTGCTGATCCATCTCTCCAGTCCCACTGACTTCTCA
CGCATTCGAAAATGCTTGACAACCATATTGAAAAAATGGCTCATTGTATA
AAGTGCTTGCCTTACAAGCATGATTATCCGACTTCCATTCCCAGATTTTA
TATGAAAAAATCATCAAATGATAAGTCAGATATGGTCGTACCTGTATTCT
CAACTCTGTATAGTCACAACCAGTATCCCTGTTACTCATCTTCACTCATT
CTTTGAATCTTTTTTTAGTCATACATTTTGTTCTTCTTAATCTTATAATT
ACTGTTTATATCTTTATGAATGATGTTTGCAGTTGATCTCTGCTTTTATA
CGTGTTTCCTTACTTTTTTGTCCTTCTTGTACATTTTCCCTTTTTTTTCT
TCTTTCTTCTTTTTCTTTCCTTTTTCTTTCTAAATTTATTTCTTCTCATA
TTTTTATTTTTTTATTTTTTTCTTTTTCTTTTTCTCACTTCTTTAGTTTT
TTTAAATTATATTTTTTCTCCCTTTTTTGTTTTATTTTTTCTTTATCTTT
TATCCTCTATTTTACTATATTTCTTTTCCTCATTTCTTTATTTTCTTTCT
CTATTCTTTTGCTTTCTTTTTTTTTATCTTTATTTTTTTCTTTTCTGTAT
TTTTTTTTCCCTATATTTTACTCTTTTATATTTTTATCTTTCTTATCTTC
TATTTCATATCTTTCTCTTCTTCTCCTCTCTCTCTATTCTTTTTATTTCT
ACTTTAGATTTCACTCTTACTAATATCTCTTTATTTTTTAACTTTGTACT
ATTTATTTATTCATTTATTTTTCTTTCTATTTCTATCTTTTTTATTATTT


NTTTGAACATGGTAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTTTAAGCACATTTAAATCCTCCAACAATTCGA
GAGTGGCCCTTAAAAGCAGCATCCGCAAAGTGGTAATGGGGGAGAGGAGA
GTTGGCACATGTAGGGAGGTGCACTTTTGTCCTTAAAAGTTAAGCAGGAT
GGGGTTCAGGGGACATTGTCAGGTGATCCAGGCAAAGGACCCATATATGG
CTGATCTTAGATAGGGATATCTATGCTGTGGGAACAGAAATAATTCTAGA
ATCAGGTATCAGGTATAGTGTCAGGTTACTTTACAGTTTTTAACTAAGGT
ACAGATGGTCTATGAAAAGAGAGAAAGAGACACACACAGAGACACTTATT
TTATAGAGAGACAGAGATCAGACATATAGAGACAGAGACAGATAAACAGA
TTTTTTTTTTTTCCCCCCACACAGATAGACAGAGAGAGAAAAAAAAAGAG
AGAGACTGACTTACAGATTGATATTCTGAGATCGTGACTGAGATCGATCT
ACAGATATAGACTTCCTGTTCATTTTTATTCCAATGAGCAATCCTCTGGT
TTGGAATTTATAGTCTCTTTCGCTTGATAAAAGATCTCTGCCTTGGCTGG
TTTTTGTTAATCCTGGAATGAGTTATTTCCCATTATTATGTTTTTTTTTT
GATTTTTTTGTTTCTATTTTATGTATTTGTTTTTTTATTTTTGTTTTTTT
TTTTTTCTTGTTATTTTTCTCTTTGTTATGTTTTTATTTTTTTTTATTTC
CTTTTTTTTTTTTTATTTTTTTTGTTCTTTTTTTTTTTTTTATTTTCTTT
TTTTTGTTTTTTTATTTTTTTTTTTTATTTTTTTTTTTTTTTCTCTTTTT
TTTTCTTTTTTTTTTTTTTTTTTTTTCTTTCTTTTTTTTTTTTTTTTTTT
TTCTTTTTTTTTTTTTTCTTTCTTTTTTTTTACTTTTTTTTTTTTTTATC
TTTTCTATTATTTTTTTATTTATTATTTATTTTATTTGTCTTTTTTTTTT
TTTTTCTTTTTTTAATTTTTTTTTATTTTTTTCTTTTTTTTATTTATTTT
TTATTATTATTATTTTTTTATATTTTTCTTATTATTTTTTTTATTTTTCT
CTTATTTGTTTTTTAATTTTTTTATTTTCTTATTTATTTATTATTATTAT
TTGTTTTTGTTATATTATTATTATATCAGTTATTTTATATTTATTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_a17.g1 MSMg01no093_a17.g1 CHROMAT_FILE:
MSMg01no093_a17.g1 PHD_FILE: MSMg01no093_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:09 2005
         (216 letters)



>mm_chr7_51233268_51233883
          Length = 616

 Score =  323 bits (167), Expect = 5e-93
 Identities = 203/219 (92%), Gaps = 8/219 (3%)
 Strand = Plus / Minus

                                                                       
Query: 2   aatgggggagaggagagttggcacatgtagggaggtgcactttt----gtccttaaaagt 57
           ||||||||||||||||||||||||||||||||||||||||||||    | |    |||||
Sbjct: 416 aatgggggagaggagagttggcacatgtagggaggtgcacttttgggggac----aaagt 361

                                                                       
Query: 58  taagcaggatggggttcaggggacattgtcaggtgatccaggcaaaggacccatatatgg 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 taagcaggatggggttcaggggacattgtcaggtgatccaggcaaaggacccatatatgg 301

                                                                       
Query: 118 ctgatcttagatagggatatctatgctgtgggaacagaaataattctagaatcaggtatc 177
           |||||||| |||||||| |||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 300 ctgatcttggatagggagatctatgctgtggggacagaaataactctagaatcaggtatc 241

                                                  
Query: 178 aggtatagtgtcaggttactttacagtttttaactaagg 216
           |||||||||||||||  |||||| |||||||||||||||
Sbjct: 240 aggtatagtgtcaggccactttatagtttttaactaagg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space:   125649
Effective search space used:   125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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