BAC Information

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BAC

Clone NameMSMg01-093L21
Chromosome7 (Build37)
Map Location 12,375,140 - 12,375,413
singlet/doubletsinglet
Overlap genenone
Upstream geneBQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2
Downstream geneEG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093L21.T7 (MSMg01no093_l21.b1)MSMg01-093L21.TJ (MSMg01no093_l21.g1)
ACCAG311101AG311102
length1,2751,248
length of high quality
(start - end)
116 (109 - 224)274 (70 - 343)
definitionCHROMAT_FILE: MSMg01no093_l21.b1 PHD_FILE: MSMg01no093_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:48:48 2005CHROMAT_FILE: MSMg01no093_l21.g1 PHD_FILE: MSMg01no093_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:48:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATAGGGAGAGGTCCGCGGAATTCATGTGACATGTTCTCCCTTAAA
AGAATCAAATTTTTATTAGATATTTTCTTCATTCCCCTTAAAAATGCTAT
CCACACAGTCCCCTATATCCTCCTCCTGCCCTGCTCCCAAACCCACCCAT
TCCCACTTCTTGGACCTGGCATTCCCCTGTAATGGTGCATATAACTTTGC
AAGACCAAGGTCCTCTCCTCCCAATGATGGTCAACTATGCCATCTTCTGC
TATATGTGTATCTAGAGACATGAGTACTATATCTAGAGTACTAGTACTAT
AGTATCTACAGCTCTGTTAGTACTACATAGTTCATACTATTGTTCTACCT
ATATGATTACTGACACTTTTATTTTTTTCTCTACTTTCTCTATCTCCTCC
ATTGTTGATCCTGTGTCCCCTCCATTATATGACCCCCCCCCATCCATCTT
CTGAGTTTGTCATTTTCTGTCATACCCTTCTCTTATCTACCTTTACCTTT
TTTTATGTCTCTTGTTCTTATTGTTATTCCTTCCCTCTTTGTCTTTCATT
TTTATTTTTCTTATTTCTTTCTCCTCTTTTTTCCTCTTTTTCCCTTTGTT
CTCTTCCTTTATATTTTTTCTTTTATTTTTTTTATCTTCCTTTTGTTTTA
TTTTCCTTATATCTTTGCTCTCATTTTATTCCTTCTATCTTTTTTTTTCT
TTTTCTTTCTTTTTTTATTCTCTTTTTTTCTTTTCTTATTCTTTTTATTT
TTATTTTTTATTCCTTTTTTTTTTTTATTTATTTACTCTTATTTTATTAC
TTTTTCTCTCTATCTCTTTCTTTTTTTCTTTTTTCTTCTATTTCTATTTC
TTTCTCCTTTTTTTTTTTTTAACTTTTTCTCCTTCTTTCTTTTTTTTTAC
TCCCCCCCCTTTATTTTCTCTTTTTCTTTTTTATTCTCTTCTTTTCTTTT
TTTTTTTCTTTTTCCCCCCTCTCTTTTATCTATTCTATCTCTTTTTATTT
TCTTTTAATTTCTTCTATTCTTTTTTTTCTCTTTTTATTCTCTTTGTCCT
CTACTATCTTTCTTCTTCTTATTATATTTTATTTTCTTTTTATTATTTTC
TTATTTTATTTTTTCTCCTTTCTTTTATTTCTTTTATTACCTTCTTTTTC
ATTCTCTCCACTTATTTATAATCTCTCTTCTCTATCTTCTTATATTTTCT
TCTTTCTTCTTTTATNTTCTTCCTATTATTAACACGTTTCATTCTATTTA
NCACTNTCTTATTCTTTCCATAGTA
NTTATCATGGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTTGGATGCCAGAAGAGCAAATCAAAGTAT
CTCCAGTTCCTAAGATGTAAGACCGAGGCAAGCTTTTATGAACATGTTCT
TATGGTTGAATCAGGGTTTGCATATGAGGCAGAAAAGCAACTTTGGGGCC
ATTCCCTATCTGAAAGTGTCATGAGGAAAACTCCACATGTGAGATTCACT
GAGGTATTCTACTGAGTCTGTAACCATACAAATATTAGGAATATTCCAGA
GCCTCCACATGTACTGTAACTATTGTTCTACAGAGAACACATAAATGTAT
AAGTCATCTCTCTGCCCCTACTGTGATAAGTTTCTACTTGAACTTTTTTT
GGAATCATTAAGAAGGAGATTTTCAATGCATATATGAGGTATAATTTTTT
TTCCCCCCCCCCCCCGATTNTTGATTTTATATAAAAAAAAGGGAGGGCTG
ATATGTCTAGTGAATTGATTATGTCTCTAGACAAGCTATATGGTGAGACT
CTGACACAACACTCCTCTTACTTGATACAGTCTCCTTGCTCATGTTTCAT
ACTATGTGCCTCTATTTTAACCTTGTGCTTAGACGCCTTTTTTATCATTT
TATTATCTCTATTCTCATGGTTGATTCTTCTGTTCTTTTTTTTCCCCTTT
TTTTTTTATTCCTTTTCTTTTTTTTTTTTTTCTTTCGTTTTCCCTTTTTT
CTTTTTCTCTTCTCATTTTTCTATCTTTTTTTTTATTCCTTTTCTCTTTT
TTTTTCCTTTTCTTTCTTTTCTTTTCTTTTTTCTTTGTTCTTGTATTCTT
CTTCTTTTTCCTTTTTTCTCTTCTCTTTTTCTTTCCTTCTTTTCTCTTTT
TTCCATTTTCTTTTTCTTTTCTCTCTTTCTCTTTTTTTTCATTTTTCTTT
TCTCTTTTCTTTATCATCCTCCTTTTTTCCTTTCCTTTCCTTCTTTTTCT
ATTTTTCTTCTTCTCTTTTCTATCTTCTCTTTTTCTTACTTTTTCTTTCT
CTTTATTTTCTTCTTTTTATTCATCCCCTCTTATCTTATATCCTTAATCT
TCTTCTTTTTCTTCTTCTCTTCTTTTTTGTTTTTCTTCTTTCCTTGTTAT
TCTTTTTATTTATTACTTACTTCTCTACTTCTCCTCTCCTCCTTCCATTC
TTTTATTTGACTAATATGTCTTCTCATACTATTTCTTGCTTATCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_l21.g1 MSMg01no093_l21.g1 CHROMAT_FILE:
MSMg01no093_l21.g1 PHD_FILE: MSMg01no093_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:48:48 2005
         (274 letters)



>mm_chr7_12374940_12375613
          Length = 674

 Score =  514 bits (266), Expect = e-150
 Identities = 272/274 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttggatgccagaagagcaaatcaaagtatctccagttcctaagatgtaagaccgaggc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 ctttggatgccagaagagcaaatcaaagtatctccagttcctaagatgtaagactgaggc 260

                                                                       
Query: 61  aagcttttatgaacatgttcttatggttgaatcagggtttgcatatgaggcagaaaagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcttttatgaacatgttcttatggttgaatcagggtttgcatatgaggcagaaaagca 320

                                                                       
Query: 121 actttggggccattccctatctgaaagtgtcatgaggaaaactccacatgtgagattcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actttggggccattccctatctgaaagtgtcatgaggaaaactccacatgtgagattcac 380

                                                                       
Query: 181 tgaggtattctactgagtctgtaaccatacaaatattaggaatattccagagcctccaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaggtattctactgagtctgtaaccatacaaatattaggaatattccagagcctccaca 440

                                             
Query: 241 tgtactgtaactattgttctacagagaacacata 274
           |||||| |||||||||||||||||||||||||||
Sbjct: 441 tgtactataactattgttctacagagaacacata 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)