BAC Information

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BAC

Clone NameMSMg01-094B21
Chromosome7 (Build37)
Map Location 28,772,784 - 28,773,396
singlet/doubletsinglet
Overlap geneC130069I09Rik, LOC100043772
Upstream geneCyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b
Downstream genePsmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094B21.T7 (MSMg01no094_b21.b1)MSMg01-094B21.TJ (MSMg01no094_b21.g1)
ACCAG311377AG311378
length706688
length of high quality
(start - end)		458 (58 - 515)613 (73 - 685)
definitionCHROMAT_FILE: MSMg01no094_b21.b1 PHD_FILE: MSMg01no094_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:37 2005CHROMAT_FILE: MSMg01no094_b21.g1 PHD_FILE: MSMg01no094_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTAATCCATGGTGATCTGATAAGATGCAAGGGGTTATTTCAAT
TTTGTATAGTTTTGTTAACGCTTGCTTTGTGTTCAGTTATATAGTTCAAT
TTTATAGGAGGTTCCCCGAGGTGCTGAGAAGGATATTTTTCTGTGTTTGA
GTGAAACGTTCTATAGATATCTGTTAGGTCCATTTGAATCATAACCTCTG
TTAGTTTCATTATTTTTCTAATGTTTGGTTTCTGTCTCAAGGATCTCTCC
ATTGGTGAAAGTGGGGTGTTGAAGTCTCCCACTATGGAAGCTTCAATGTA
TGATTTAAGCTTTTAGTAATGTTTCTTTTACAAATGTTGGTGCCCCTTGC
ATTTGGGGCACAGATGTTCAGAATTCAAATATCAACTTGGTGTATTTTTC
CTTTGATGAGTATGAAGTGTCCTTCCCAATCTCTTTTGACTACTTTTGGT
TGAAAGTTTATTTTATTAGATATTAGAAATGGTTACTTCAGTTTGTTTCT
TAGGTTCATTTGCTTGTGAAACTTTTTCCCTAGTATTTTACTCTAAGATA
ATGTCTATCTTTGTTGCTGAGATATGTTTCTGTTATACAGCACAATGATG
GGGTTCTGTTTAAGCATCCATTCTGTTAGCCTGCGCCTTTTTACTGTGGA
TTTGAA

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATACGGATGTGCATCCCTATCATTGCAA
GGAATGTGGAAAGGCTTTGCTAGTGGTCCAATTCTTAGAATTCATGAGAG
AACTCACAGTTGTGATTCACACTCATGAGAGACCTTACCAGTGTTAAGAA
TGTATAAAGGCCTTTAGTCAAAAATAAAGCTGGTTGGGCTCTAGAGTTCA
TATTAATAGAAGCCTTATGAATATAGAGAATGTGAAAAGGCCTTTAGCAA
TAATTCTAAGCTACCTGTATATTAGAAAACTTATACTGGTGAGAAACCCT
ATGAATATAAAAAGTATGGGAAAACATTTAGAATTAGTTCATCCTCCCAT
GCACATTGGAGAATTCATACCAGTGTAAAACCTTGTCACTGTAAAGAATG
TGGAAATAACTTCAATTGGAGATCAAGTCTTCTTCAACATAAAAGAATCC
ATGCTGGTATGAAACCTTTTGAATACAAGGAATGTAGAAACATAACAGAA
ATAGCAAAGCTCTTAAAGCTCTTCAGAGAGGACAGGTAGATCTGAAACCC
TATAAATGCAAAGGCTGTGAAAGCCCTTATTTTCAATGATGAGCTTACAC
AATATCAGAAAAACCATGATCATCAGGAGTCCTGTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_b21.g1 MSMg01no094_b21.g1 CHROMAT_FILE:
MSMg01no094_b21.g1 PHD_FILE: MSMg01no094_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:37 2005
         (613 letters)



>mm_chr7_28772584_28773596
          Length = 1013

 Score = 1093 bits (565), Expect = 0.0
 Identities = 601/613 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacggatgtgcatccctatcattgcaaggaatgtggaaaggctttgctagtggtccaat 60
           |||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||| 
Sbjct: 813 atactgatgtgcatccctatcattgcaaggaatgtggaaaagctttgttagtggtccaag 754

                                                                       
Query: 61  tcttagaattcatgagagaactcacagttgtgattcacactcatgagagaccttaccagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 753 tcttagaattcatgagagaactcacagttgtgattcacactcatgagagaccttatcagt 694

                                                                       
Query: 121 gttaagaatgtataaaggcctttagtcaaaaataaagctggttgggctctagagttcata 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 693 gttaagaatgtataaaggcctttagtcaaaaatgaagctggttgggctctagagttcata 634

                                                                       
Query: 181 ttaatagaagccttatgaatatagagaatgtgaaaaggcctttagcaataattctaagct 240
           ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 633 ttagtagaagccttatgaatataaagaatgtgaaaaggcctttagcaataattctaagct 574

                                                                       
Query: 241 acctgtatattagaaaacttatactggtgagaaaccctatgaatataaaaagtatgggaa 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 573 acctgtatattagaaaacttatactggtgagaaaccctatgaatataagaagtatgggaa 514

                                                                       
Query: 301 aacatttagaattagttcatcctcccatgcacattggagaattcataccagtgtaaaacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aacatttagaattagttcatcctcccatgcacattggagaattcataccagtgtaaaacc 454

                                                                       
Query: 361 ttgtcactgtaaagaatgtggaaataacttcaattggagatcaagtcttcttcaacataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ttgtcactgtaaagaatgtggaaataacttcaattggagatcaagtcttcttcaacataa 394

                                                                       
Query: 421 aagaatccatgctggtatgaaaccttttgaatacaaggaatgtagaaacataacagaaat 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aagaatccatgctggtgtgaaaccttttgaatacaaggaatgtagaaacataacagaaat 334

                                                                       
Query: 481 agcaaagctcttaaagctcttcagagaggacaggtagatctgaaaccctataaatgcaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agcaaagctcttaaagctcttcagagaggacaggtagatctgaaaccctataaatgcaaa 274

                                                                       
Query: 541 ggctgtgaaagcccttattttcaatgatgagcttacacaatatcagaaaaaccatgatca 600
           ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 273 ggctgtgaaagcccttattgtcaatgatgagcttacacaatatcagaaaatccatgatca 214

                        
Query: 601 tcaggagtcctgt 613
           |||||||||||||
Sbjct: 213 tcaggagtcctgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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