BAC Information

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BAC

Clone NameMSMg01-094C20
Chromosome7 (Build37)
Map Location 100,966,913 - 100,967,427
singlet/doubletsinglet
Overlap genenone
Upstream geneRab30, 4632434I11Rik, Prcp, A830059I20Rik, LOC100040298, LOC666783, EG638305
Downstream geneEG545982, EG666816
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094C20.T7 (MSMg01no094_c20.b1)MSMg01-094C20.TJ (MSMg01no094_c20.g1)
ACCAG311420AG311421
length1,638704
length of high quality
(start - end)
---518 (74 - 591)
definitionCHROMAT_FILE: MSMg01no094_c20.b1 PHD_FILE: MSMg01no094_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:43 2005CHROMAT_FILE: MSMg01no094_c20.g1 PHD_FILE: MSMg01no094_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAAAAAAAAAAAAAAAAAAAAAAATAATNAAAAAANNNTNATAAAANNN
TNTTNNNCNTNTNNATNTNNNNNNNNNNNTATTTTTTTCATAATAAATAA
TATTTATATNAATATTAGATATGATATATTATAATAATACTGTATAGTAT
GTATTCGGCCTCGTCTGTCTGACGGTCTATATATAGATGCTCCTCTCGCG
TGCGCGACGAAGTATTTGTTGGATTGTTATCAGTTTCTTACTCCTGCACT
CGCATCCGCCCCTCGTGCCTGTCTCGCGNCATGCGCGCGACTATGGCGAC
ACGAGAAGGTGTAATAGGATCACTCTGCGTACAAGATCGACGTATGAGGT
CATTGGCACCTCTCCAAACTCGCCTACTGACATCCATATCGTATCGCGCA
TGTCTCATANTCGAGTGCGACACCNNCCCNGCCTNATGATGCTGACTACT
ATGTCGCCACGTCGCACTCATGACTGCTCTCGCAGCCTGCTCTAGCAGAC
CCGCTCTATGGCACTTCTTACTGCGCGCCNACACACTATACTATCCTAGT
AGACGCTCGTGTAGATATAANTGTCGTCGCCTCACTACGGCGCGTGCTCG
CGCCGCTTGTGTGCGGTATGATTCCGCCGACCGCGTCGCCGTATTTATAC
ATCATCTGCGTGTATGATGATATGTAGACGCATATATCTANTAAATATAT
TATCAGTATCTTATGATCTACTTGTTTAGTACGCGGTGTTGCTACGCTGG
CTGTGCTCTGTGCGCCGCGTCTCGTGTGGTANTNTCGACGCGTGTTGCGT
CGTTCTGCACCCGACACGACATATGCGCTCACATTAATCACCACCTCTAC
TNTCATANATAATAATCTCTCATATATCGATGACGCCTACGGAGTCGCGT
GGTGATGTGTGCCGTCGACTCGCTGTGCACTGCGTCATACGCACTGCTAT
ACGCGCGCGTGTAGCNCGCGCGGAAAAGCGTGCAGATGTATTACTCATAA
TACGTATACACTGACAGTATCTCGCTATTTTCATCTCGCCGCACGACAGC
GTAGATATATGCACATCTGCCAACTACGACGTCTTCGTATGTCGANTAGG
ACANTTTACGCAGCCATCCGCTACATCGTGTGCTCATACTTGNTATCTAT
GGAGCACCACGACGTATGCACGCGAGCGCGTAGCACGACTAGTGTCAGGC
TATGTATACGTACATATATATGGGTGTCGCGCGCTCGACTGTGTTCGCTA
CAGATCAGAGTAGCAGCGTAATGGCATGTTTNGCTCGCACTGCTGCGCTC
GAGTGATCCGTAGCGCGCGCTTGATATATACTATGATCACAGCGANCGCT
TAGCGGTCTGATGTATGTACGCGGTCATACTANTCGCTCTGTATGACGCG
CGGCGCTCTTATCACACACCATGACTACATATATCACTTANATTCTGCAC
CACACATCNCTCTAGCACACTATGACGTACCTCCCGACCGCGACGGCTAA
CGCTCGTGCATCGACGCCGCGCAGAATGCGATATGCGCCCACTACCGCCC
ATCGTCCGTGCTATACTACTACATAACTACGCGCATACACAGACACTACA
TCTCGCTCGCACAGCTATATATATTTATATGAAATAGN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTATAAATTGAGATAGTATTAATGTTC
TATGTAAAAAAAGAGGAACACGGAAGTTGGATATTGAGGAGAGAGATGGG
TATGGGACTTTAATAGACTCTACTATAGTTCCAGTTTCCATATAAGCTGA
AAATCACATTCCAGTACGCCACTCCCTTTTCTCTCCCCCCTACATTCTGA
CAATACTTAGCTGATGAAGGTCCTTAACCAGATCCAATATCCATATTTGT
ATCAGGCTCGTAGTCCTGTCAGATATTCATTATTGGAACAGAGATTTTCA
TGTACATTAATTTTGGATATGTAAGTTCTGACAAATGTCCTCATGATGAT
ATGGCACAGGTTTCATTTATCTAATATGCACAGGAACCAACATCCATTCC
TCCTGTGACAACTGAGATCAATCATCACCAACCAAATCTAAATCTATAAA
AATGGAAACCAAGGGCAGTGATTAGGAAGCAGACTGGCAGGCAAGCAAGG
GATCAGGAAGTGTGGGAACTCTAGGCAAGACCAAGTTGCGAGCAACATGG
AGGGCAGAGAGCAGCTACTGCAGTGGGGGTAACTGGCGCTGGCTGAGCTG
AACAAACAATATAGCATACATCACCAAGATCAGTAAGGCAACCTGGCCCC
CGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_c20.g1 MSMg01no094_c20.g1 CHROMAT_FILE:
MSMg01no094_c20.g1 PHD_FILE: MSMg01no094_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:43 2005
         (518 letters)



>mm_chr7_100966712_100967630
          Length = 919

 Score =  965 bits (499), Expect = 0.0
 Identities = 511/515 (99%), Gaps = 1/515 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   tataaattgagatagtattaatgttctatgt-aaaaaaagaggaacacggaagttggata 60
           ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 716 tataaattgagatagtattaatgttctatgtaaaaaaaagaggaacaaggaagttggata 657

                                                                       
Query: 61  ttgaggagagagatgggtatgggactttaatagactctactatagttccagtttccatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ttgaggagagagatgggtatgggactttaatagactctactatagttccagtttccatat 597

                                                                       
Query: 121 aagctgaaaatcacattccagtacgccactcccttttctctcccccctacattctgacaa 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aagctgaaaatcacattccactacgccactcccttttctctcccccctacattctgacaa 537

                                                                       
Query: 181 tacttagctgatgaaggtccttaaccagatccaatatccatatttgtatcaggctcgtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tacttagctgatgaaggtccttaaccagatccaatatccatatttgtatcaggctcgtag 477

                                                                       
Query: 241 tcctgtcagatattcattattggaacagagattttcatgtacattaattttggatatgta 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 476 tcctgtcagatattcattattggaacagagattttcatgtacattatttttggatatgta 417

                                                                       
Query: 301 agttctgacaaatgtcctcatgatgatatggcacaggtttcatttatctaatatgcacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 agttctgacaaatgtcctcatgatgatatggcacaggtttcatttatctaatatgcacag 357

                                                                       
Query: 361 gaaccaacatccattcctcctgtgacaactgagatcaatcatcaccaaccaaatctaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gaaccaacatccattcctcctgtgacaactgagatcaatcatcaccaaccaaatctaaat 297

                                                                       
Query: 421 ctataaaaatggaaaccaagggcagtgattaggaagcagactggcaggcaagcaagggat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ctataaaaatggaaaccaagggcagtgattaggaagcagactggcaggcaagcaagggat 237

                                              
Query: 481 caggaagtgtgggaactctaggcaagaccaagttg 515
           |||||||||||||||||||||||||||||||||||
Sbjct: 236 caggaagtgtgggaactctaggcaagaccaagttg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 919
Length adjustment: 10
Effective length of query: 508
Effective length of database: 909
Effective search space:   461772
Effective search space used:   461772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)