BAC Information

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BAC

Clone NameMSMg01-094E24
Chromosome7 (Build37)
Map Location 97,414,131 - 97,414,538
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem135, LOC100039969, Fzd4, Prss23, LOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83
Downstream geneSytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik, LOC666689, LOC621816, LOC100039943, Dlg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094E24.T7 (MSMg01no094_e24.b1)MSMg01-094E24.TJ (MSMg01no094_e24.g1)
ACCAG311517AG311518
length694711
length of high quality
(start - end)
412 (43 - 454)516 (73 - 588)
definitionCHROMAT_FILE: MSMg01no094_e24.b1 PHD_FILE: MSMg01no094_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:54 2005CHROMAT_FILE: MSMg01no094_e24.g1 PHD_FILE: MSMg01no094_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCGGGTTGTGGGCTGGTGGTTCTCAAGTACAAATAGCCCAAAGCACTCT
CCCTCCCTCCCTTCCAACCCCATCCGGGTCCCTTCCCGCTGTTTTCAAAG
CGACTGGCATCTTCATCTACTATCCCATTCTGGTTTAGGCACCATGGCGA
TTCGCGCGCGCCACCTGGCGGGCATATGATGAATAGTGCGGGTGAGGGAG
TGCATGCAGAGGTTAGGGCAGTGGTCCAGTCCTTTCTTCTTTTCCCCCAA
GGCCTCTCTCTCCTCTTTTCGAATTCTCTGTGCTTGGAAGGTGGTGTATG
TAAATAGGACTCCAGCTTTGTGCGCATGCCTCGCTCGGTTCATTGCAAGC
TTATATTTGCTGATATAAAATGACTCCTCTGTGATTTCCAAACGACTCCC
CGGGTGTGGCAAGGGGCAGAACTCCTGTGACAGAGGTGCTCTGCTTTTCT
GTCTGCGTTTGTCAGCTTGGTTTAACTCCAGCAAGTGCTCACAGGGCAAC
TTGAGGCACTGAAGTCTTTGCATCTGTCTTCTCATTTTACTTTTAAGCGT
TTAACAAAGCAATATAGCGCAGTTCAGCCTCATCCTGAAGGCAGTCTATT
AAAGACTCCCATTTCTCTCATTACACTCCAGGAATTTTCTTTTT
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAACTTTTATCATGAAT
GGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCAT
GTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATT
TTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCA
GGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTT
ATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCT
CTATCTTTGTTGGGTCTTTCTGTGGCTTAGGTATCAGAGTAATAGTGGCT
TCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAATAG
TTTGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGGTAGAACTCTG
CACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAATA
ACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGATGGTCAACTTG
ATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTT
CGTCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGCAGAAGGATCTG
ATGGTGTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_e24.b1 MSMg01no094_e24.b1 CHROMAT_FILE:
MSMg01no094_e24.b1 PHD_FILE: MSMg01no094_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:54 2005
         (412 letters)



>mm_chr7_97413927_97414738
          Length = 812

 Score =  750 bits (388), Expect = 0.0
 Identities = 403/408 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccgggttgtgggctggtggttctcaagtacaaatagcccaaagcactctccctcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccgggttgtgggctggtggttctcaagtacaaatagcccaaagcactctccctcc 264

                                                                       
Query: 65  ctcccttccaaccccatccgggtcccttcccgctgttttcaaagcgactggcatcttcat 124
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcccttccaaccccatccgggtcacttcccgctgttttcaaagcgactggcatcttcat 324

                                                                       
Query: 125 ctactatcccattctggtttaggcaccatggcgattcgcgcgcgccacctggcgggcata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctactatcccattctggtttaggcaccatggcgattcgcgcgcgccacctggcgggcata 384

                                                                       
Query: 185 tgatgaatagtgcgggtgagggagtgcatgcagaggttagggcagtggtccagtcctttc 244
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgaggaatagtgcgggtgagggagtgcatgcagaggttagggcagtggtccagtcctttc 444

                                                                       
Query: 245 ttcttttcccccaaggcctctctctcctcttttcgaattctctgtgcttggaaggtggtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttcttttcccccaaggcctctctctcctcttttcgaattctctgtgcttggaaggtggtg 504

                                                                       
Query: 305 tatgtaaataggactccagctttgtgcgcatgcctcgctcggttcattgcaagcttatat 364
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 505 tatgtaaataggactccagctttgtgcgcatgcctcgctcgggtcattgcaagcttatat 564

                                                           
Query: 365 ttgctgatataaaatgactcctctgtgatttccaaacgactccccggg 412
           |||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 565 ttgctgatataaaatgactcctctgtgatttcaaaacaactccccggg 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)