BAC Information

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BAC

Clone NameMSMg01-094J18
Chromosome7 (Build37)
Map Location 51,134,664 - 51,134,947
singlet/doubletsinglet
Overlap genenone
Upstream geneEG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5
Downstream geneKlk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094J18.T7 (MSMg01no094_j18.b1)MSMg01-094J18.TJ (MSMg01no094_j18.g1)
ACCAG311730AG311731
length739694
length of high quality
(start - end)		235 (176 - 410)283 (56 - 338)
definitionCHROMAT_FILE: MSMg01no094_j18.b1 PHD_FILE: MSMg01no094_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:20 2005CHROMAT_FILE: MSMg01no094_j18.g1 PHD_FILE: MSMg01no094_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTTTATTTTATTTATTTTTTCTTTTTTATTTATTTTATAAAAANAGCC
CGNNNCGGTATTATAATTTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CCGCGGAATTCCGTTTATTCTTATCCCTTGAGAATGAATCCTCTGATATG
GAATTTAGAGTCTCCAAGTTTACGAAGAAGTCACAGTCTTTGCTGGGTTT
TGGGAATTCTGGAAAGGTGAGATATCAGAAAACTAGATTTGAATAAATAA
ATAAATCCAGGAAAGGGAGCTTGGGGTTGATTTTGGGTTTCTTGGATTGG
GCATGAAGTGGCAGCTGGGATGAAGAGATTGAGGAATTTCCAGGTAAAAG
GAGCAGGGTCAAGGCTAAGGCGTGGGCTCATTTTAGGTTCTGTGGTGGAG
ATGACATCTTTTTTTTGTGCCCCTCCCCGACAATGCTGTTTGAGATAGGA
CATGCAGTGAGAGAAGGACACTCTAGAAAAACTGCGAGGAACAGGGTCTG
CTCCTGTGAAGGTGGTCAAGTGATCTGGGTATTGGAGATTTTCATGGTTC
TCTTGCAGGCAGCCTCTGTATCAGGTGTGGATAAGGAATTATAGATTCTG
CATGTTAACGTATTCTTACTTTAATTTTGTCTGGCAACTTCGACGAATAG
CAGAGGTACTCTTTGATGTGAGGCTACACGGTTATGGACTGGCTTTCTCT
GCACATGTCCTGCACATTAGTGTCACTTAAACTTTCTCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCACACAAACAGAAACATGCATATGTTTTTCCATGGTCTCTGAGAGAG
CCCGGTGTAAAGCTCCTACCCAGAATCCTCTAGTGAGGGATGAGTGTGAG
GTTGTCATGTGTCCCTCCAGGTATGCGCTTCTGCTCTTCCCATCTGCAGA
TCTCCAAGTCTCCATCTCTCTGAACCTTCACGTCCTTCTGTGGTCTGGCA
TCCCCCAGTTCTCTTGGTTCACATTTGTCCCTTCTTGTCTCTGAAGTGGA
TTCCCATCTTAGTGCAAATAACCCCAATATGTGAGACCAGAAATGTTCCC
AGTGCCTACATCCATAACTCTAGGTCACCTCCACCTGACCCAGCGGGAAG
ACAGAAAAGCACCAGCCACCTGTTTGCTCTTTGCCTTAGCTGGCCTCCCT
GTCATCAGTACTGGCCTCATCAATCACAGTGTGTACCTATGAGTCCTGAT
GGACCCCAGTATGCCCATTTGAATTCCAGACTTTCCCACCAAACTCCAGT
ATCTACCTCTTGAACTCCAGCATCTCCCTTTTTGGACCCCAGTATCCCCC
CTTCTGGACCTCATTATCTCCCTCCTGGACTTTAGCATCTTCCATCAGAT
CCCGTTTTCTTTTTCTTGTACTCCAGCATCCCCCCTCCTGTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_j18.g1 MSMg01no094_j18.g1 CHROMAT_FILE:
MSMg01no094_j18.g1 PHD_FILE: MSMg01no094_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:20 2005
         (283 letters)



>mm_chr7_51134464_51135147
          Length = 684

 Score =  518 bits (268), Expect = e-151
 Identities = 280/284 (98%), Gaps = 1/284 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaaacagaaacatgcatatgtttttccatggtctctgagaga-gcccggtgtaaagct 59
           |||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||
Sbjct: 201 cacaaacagaaacatgcatatgtttttccatggtctctgagagatgtacggtgtaaagct 260

                                                                       
Query: 60  cctacccagaatcctctagtgagggatgagtgtgaggttgtcatgtgtccctccaggtat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctacccagaatcctctagtgagggatgagtgtgaggttgtcatgtgtccctccaggtat 320

                                                                       
Query: 120 gcgcttctgctcttcccatctgcagatctccaagtctccatctctctgaaccttcacgtc 179
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 gcgcttctgctcttcccatctgcagatctccacgtctccatctctctgaaccttcacgtc 380

                                                                       
Query: 180 cttctgtggtctggcatcccccagttctcttggttcacatttgtcccttcttgtctctga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttctgtggtctggcatcccccagttctcttggttcacatttgtcccttcttgtctctga 440

                                                       
Query: 240 agtggattcccatcttagtgcaaataaccccaatatgtgagacc 283
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtggattcccatcttagtgcaaataaccccaatatgtgagacc 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 684
Length adjustment: 9
Effective length of query: 274
Effective length of database: 675
Effective search space:   184950
Effective search space used:   184950
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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