BAC Information

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BAC

Clone NameMSMg01-095A11
Chromosome7 (Build37)
Map Location 30,963,721 - 30,964,005
singlet/doubletsinglet
Overlap geneEG330503
Upstream genePsmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146
Downstream geneCox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095A11.T7 (MSMg01no095_a11.b1)MSMg01-095A11.TJ (MSMg01no095_a11.g1)
ACCAG312042AG312043
length730713
length of high quality
(start - end)		282 (28 - 309)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no095_a11.b1 PHD_FILE: MSMg01no095_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:55 2005CHROMAT_FILE: MSMg01no095_a11.g1 PHD_FILE: MSMg01no095_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCGCTATACGACTCCTATTCGGAGAGGATCCGCGGAATTCCACAAA
TATACGGTGAGTTGGTGGTGTTCTCCACCTTTACAGAGGAAGCAGATGAT
CACCACTTTTACGCGAAATTTTATACTATATTTTTTTTAGACAGGGTTTC
TCTGTGTAGCCCTAGCTCTCCCAGAACTGTCTCTGTAGGCAGGATGGCCT
CAGACTCACAGAGATCCTTCTGGGATTAAAGGCATGAACAACCTCCGCCT
GGCTAAGACAACATGTCTTAAGTCACAGTCAAAAGACTAGCAGAGCTAAA
GAGATGGCTCTTTATTTACATGTTGCTTTTCTGGAGGCCATGGGTTCGAT
TCTTCTTCCCCCCCCCCACACCTTACTATTGTGGTTCATTGTTTTTATGC
GTACCCCCCCCCATAGTAAAAAATATCTTCTTGCCGGCGCCGCTCTCCAT
TCTTTGTCTTCTGCTCTTTGTTTTCTCCTTTTTTCTTTCTTCCTTATCTA
TCTACCCTACTCACCTTTATATTACGTGTATATAAATTTTTCTCCATTTT
ATTTTCCCTCTCTTTTTATGATCTTCACTCCTCTCTGCTCTTTTTGACAG
CGCTATTACTTATATTTACTACATTCTAATATCTCTTTTTTCTTTCTCGA
CCACCATTTGATTACACTTCCCTTACCGATTTTCACTCTAATTATGCTCT
TATACCCCTCATTGTTAGACTATCCAGTTG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATACATACGAGAAGCCCTGCCTATGC
AGGAAGTGCGGAATGGCTTTTATTCGAAGTTCACAACTTACTGAACATCA
CAGAATTCATCCTGGTGTCAAACCCTATGAGTGTGGAGAGTGTGGGCAGG
CCTTTATCCGTGGCTCTCAGCTCATTGACCACTACCGAGTTCATTCCGAC
TGGAGTCCTTAACATTAGTGGTGTGCTTATTCAATAGTCTCTATTCAAAG
TTGACCTCTGGCCAGGGTTACTTTGCCCCCAGTGTAACTAATGTTGGGAG
AACTTTGTTTTTCTCGTTCCCCCCCCCCCATCAGAAAACGCAATACCAGG
AGAAAGACTCATTACCCCCCAAAATCCAATTTTCCTCGTTCACTGGTTAC
TAAGCAGCAGCAAACCTGTGCTAATATATAGCTTGATATGATTGTATATA
ATTCTTTTATTACCTATCACGATATGTTCAGTTTCTGATAATCCCTCATA
CATGCCCACGTTTGTTACCAGACTTTCTATCATATTTTTCTTTTTTATCT
ATTTTTGTTTTTGTTTTTCTTTCAATCCATCTGTTCGCATTCACACTAAA
TAAGCGATCTCCCTTTTTCCCCTCTATACCTGCTTTTTTTGATTTTATTT
CCCTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_a11.g1 MSMg01no095_a11.g1 CHROMAT_FILE:
MSMg01no095_a11.g1 PHD_FILE: MSMg01no095_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:55 2005
         (289 letters)



>mm_chr7_30963521_30964209
          Length = 689

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacatacgagaagccctgcctatgcaggaagtgcggaatggcttttattcgaagttcac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 atacatacgagaagccctgcctatgcaggaagtgcggaatggcttttattcgtagttcac 260

                                                                       
Query: 61  aacttactgaacatcacagaattcatcctggtgtcaaaccctatgagtgtggagagtgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacttactgaacatcacagaattcatcctggtgtcaaaccctatgagtgtggagagtgtg 320

                                                                       
Query: 121 ggcaggcctttatccgtggctctcagctcattgaccactaccgagttcattccgactgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcaggcctttatccgtggctctcagctcattgaccactaccgagttcattccgactgga 380

                                                                       
Query: 181 gtccttaacattagtggtgtgcttattcaatagtctctattcaaagttgacctctggcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtccttaacattagtggtgtgcttattcaatagtctctattcaaagttgacctctggcca 440

                                                        
Query: 241 gggttactttgcccccagtgtaactaatgttgggagaactttgtt 285
           ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggttacattgcccccagtgtaactaatgttgggagaactttgtt 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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