Query= MSMg01no095_b01.b1 MSMg01no095_b01.b1 CHROMAT_FILE:
MSMg01no095_b01.b1 PHD_FILE: MSMg01no095_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:58 2005
(600 letters)
>mm_chr7_107521864_107522863
Length = 1000
Score = 1079 bits (558), Expect = 0.0
Identities = 580/592 (97%), Gaps = 9/592 (1%)
Strand = Plus / Plus
Query: 10 ttcaaggccagcctggtctac-aatcaaatctaggccagccagagcgggttacactgagg 68
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ttcaaggccagcctggtctacaaatcaaatctaggccagccagagcgggttacactgagg 276
Query: 69 atccctgtctcaaaacaaacaaacagaacaaaaaaagagtgaggttaagaataatgtatc 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 atccctgtctcaaaacaaacaaacagaacaaaaaaagagtgaggttaagaataatgtatc 336
Query: 129 ttctccattattttatttatttatttattcattttacatcccagttgctgccccctctac 188
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttctccattat--------tttatttattcattttacatcccagttgctgccccctctac 388
Query: 189 cgacctcacagagtcactctcccacgataacgtatcttaactgtggtcaactatggattt 248
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cgacctcacagagtccctctcccacgataacgtatcttaactgtggtcaactatggattt 448
Query: 249 acaacagtattaaacaaaacttccaactacggagattttaaaatctgtccactggtttta 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 acaacagtattaaacaaaacttccaactacggagattttaaaatctgtccactggtttta 508
Query: 309 ttgtctttatgcttttcaaataatatctttcaattaaagaaaagtttggattaacataag 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttgtctttatgcttttcaaataatatctttcaattaaagaaaagtttggattaacataag 568
Query: 369 tgaccaggtaggttattttatggcctgtttttctagttacttctcagttctgttaggaaa 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tgaccaggtaggttattttatggcctgtttttctagttacttctcagttctgttaggaaa 628
Query: 429 agccttctctgtcgacattgagttttatttttcattcaaagaatatatagggtatataga 488
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agccttctctgtcgacactgagttttatttttcattcaaagaatatatagggtatataga 688
Query: 489 ccttatcccagctctcaagaggaagaggcaggtggatctctgcgagtttgaggccaggca 548
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ccttatcccagctctcaggaggaagaggcaggtggatctctgcgagtttgaggccaggca 748
Query: 549 gttttaagtaagtgaattccagacaagccaggattacctagtaagatgtcta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gttttaagtaagtgaattccagacaagccaggattacctagtaagatgtcta 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no095_b01.g1 MSMg01no095_b01.g1 CHROMAT_FILE:
MSMg01no095_b01.g1 PHD_FILE: MSMg01no095_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:58 2005
(543 letters)
>mm_chr7_107660532_107661474
Length = 943
Score = 1004 bits (519), Expect = 0.0
Identities = 537/543 (98%)
Strand = Plus / Minus
Query: 1 ctggggctgcctggacagtcagcctagcctacctggagagttccgggccaccgtgagact 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 663 ctggggctgcctggacagtcagcctagcctacctggagagttccgggtcaccgtgagact 604
Query: 61 gtgttaataaatgaggtggatagaggaacaggagaggtggtcctctgtcacaaccatctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gtgttaataaatgaggtggatagaggaacaggagaggtggtcctctgtcacaaccatctg 544
Query: 121 taacgggatctgatgccctcttctggtgtgtctgaagacagatacagtgtattcaatcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 taacgggatctgatgccctcttctggtgtgtctgaagacagatacagtgtattcaatcaa 484
Query: 181 ttgattaattaatgggtcattctttccatattggaatgggctacttagaagaagggggtc 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 483 ttgattaattaatgggtcattctttccatattggaatcggctacttagaagaagggggtc 424
Query: 241 tctggagttggtctttgatgttttgtccccagcccctgctctctgtgtttctcttctctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 423 tctggagttggtctttgatgttttgtccccagcccctgctctctgtgtttctcttttctt 364
Query: 301 cccttctctttccctcccctcttgtgcccccgtttccccttttctcctcttcactcctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 cccttctctttccctcccctcttgtgcccccgtttccccttttctcctcttcactcctct 304
Query: 361 ttcttctcttttctcccttccctctcccacttctctgtctgtccttcctggctgccatac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ttcttctcttttctcccttccctctcccacttctctgtctgtccttcctggctgccatac 244
Query: 421 agcgagcagcttggctcctactgtgatgctcgacctgaaggcaatagtcagccacttatg 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 243 agcaagcagcttggctcctactgtgatgctcgacctgaaggcaatagtcagccacctacg 184
Query: 481 tgtggaaaccattaatcgaaggtattttgtcacagtaacaagaagccaacctgtcctgtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tgtggaaaccattaatcgaaggtattttgtcacagtaacaagaagccaacctgtcctgtg 124
Query: 541 tct 543
|||
Sbjct: 123 tct 121
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
