BAC Information

Click to search

BAC

Clone NameMSMg01-095F22
Chromosome7 (Build37)
Map Location 30,840,968 - 30,841,261
singlet/doubletsinglet
Overlap geneZfp82
Upstream geneRyr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798
Downstream geneZfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095F22.T7 (MSMg01no095_f22.b1)MSMg01-095F22.TJ (MSMg01no095_f22.g1)
ACCAG312300AG312301
length656985
length of high quality
(start - end)		294 (28 - 321)---
definitionCHROMAT_FILE: MSMg01no095_f22.b1 PHD_FILE: MSMg01no095_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:22 2005CHROMAT_FILE: MSMg01no095_f22.g1 PHD_FILE: MSMg01no095_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:22 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATGATCCGCGGAATTCATTCTGGTGAGAAACCCTATGAGTGTAAGGAGTG
TAAGAAGGCCTTTAGACAACATTCTCACCTCACCCATCATCTGAAGGTTC
ATACTGTCAAAGTGTGACAAAGTCTTAGCCATCTCCTAGAACATTCTGTG
AATGTTAGGGCTAATCTTGCTTGTCCATACATGTAACTGACCTGGCATAA
GTGGTTTTATATCATTAAAGGAATATATTAATGTAATGTGTTTCACTGTG
TCCCAGTCTGTTCTCCACTATAATGCTTCTGTATGCTTATTCTGCAGCCC
TGCATATGAGCAAATGTGGGGAATATGACACCTCTGCTTCTTACTTCAGT
TATATCAAAACACTCAGATGCTCTGCTCTGTGGTTTCCCTCCTTTGTGAA
ATGGTGATCTAAGACTGGTAAGAAATGTCTGCAAATTCTTCTAAACTCCT
ACAGCCCACATCCTTTTCTTGGATGCCAGCTGCCGTGTTACCCAGGAGAG
CATAGTAAGAGCACGTCAGTATCCCTGTCAGGACCCAATCATTACTGTGC
TGGTTTAGGCCCATCCCTACTTCCCCTCCCTTTTCCCCCCCCCCTTCTCT
CTCTATCCTCTCTCCCTTATCACCCCTCTTTATCTTTAACCCCCCCTAAA
TTCTAT

TTTTTTTTTTTTTTTTATTTTTNTTTTTTTTTTTTTTTTTCTGCAGGGCC
GTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTCTTTAGATTG
NGTTTCCTTTTCTTTAAAAAGTGCNNNNNNNNNNGGNNNTTTTTTTTAAA
AAAGAGGAGAGGGGGGNNNNNNTNTTNTTTTTTGAANCCAAAAATTTTTT
TTTTCTTCTAAAAAGAAGGGGGGGNNNNNNNNNNNNNNNNNNTTTTTNTT
TNATTTTTTTGGTTGTTGAGATAAGGAGGAAATTTTTTTTTTTTTTTTTT
TCCCCCCCCAAAAAAAAAAAAAGAAGAAGGGGGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGNNNNNNNNNNNNNNNNGNNNTNNNNNTNNNCTGTNNNN
TTCATATATNTTTTTTTTTTATCTTTTTTTTATTTATTTATTTTTTTTTT
TCTTTTTTCTATTTTTTTTTTTTTTTTATTTATAATATTTTTTANATACC
TTTCCCCCCCCCCCCCCCCTTTTTTTTTTTTTTATTTTTTTTTTTGTTCG
CTTTTTTTTTTTTTTTTCATTAAAAAAAAAAAAAAAATTATTTTGTTGGG
TGTTGTTGGGTGGGTTTTTTTTTTTCTCTTTTTTTTATTTATATTTTTTT
TTTTTTTTTTTTATTTTTTACTTTTTTCTTTTCTTTCTTTTTTTCTTTTT
TTTCTTCTCTTTCTTTTATTTTTTTTTCCTTTCTTTTTTTTTTTTTTATT
TTTTTTCTTCTTTTTTCTTCTCTTTCTTTTCTCTCGCTTTTTTTATTTTT
CTTTTTATCTCTCTTTTACTCTTTATATTTATTTCTGCTTTTATTTATTC
TTCTTTTTTTTCTTCTCTGTTCTGTTTTTCTTATCTTTTTTTTTATGTTT
TTTCTCTTTTTTTTTTTTTCTTTGTTTCTCGATTTTCTTTTTCATTCCTT
TTTTTTCTGTTTTTTCTTTTATTTTTTACTCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_f22.b1 MSMg01no095_f22.b1 CHROMAT_FILE:
MSMg01no095_f22.b1 PHD_FILE: MSMg01no095_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:22 2005
         (294 letters)



>mm_chr7_30840768_30841461
          Length = 694

 Score =  499 bits (258), Expect = e-146
 Identities = 285/294 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaccctatgagtgtaaggagtgtaagaaggcctttagacaacattctcacctcacccat 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aaaccctatgagtgtaaagagtgtaagaaggcctttagacaacattctcacctcacccat 435

                                                                       
Query: 61  catctgaaggttcatactgtcaaagtgtgacaaagtcttagccatctcctagaacattct 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 434 catctgaaggttcatactgtcaaagtgtgacaaagtcttagccgtctcctagaacattct 375

                                                                       
Query: 121 gtgaatgttagggctaatcttgcttgtccatacatgtaactgacctggcataagtggttt 180
           |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 374 gtgaatgttatggctaatcttgcttatccatacatgtaactgacctggcataagtggttt 315

                                                                       
Query: 181 tatatcattaaaggaatatattaatgtaatgtgtttcactgtgtcccagtctgttctcca 240
           |||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||
Sbjct: 314 tatatcattaaaggaatatactaatataatgtgttccactgtgtcccagtctgttctcca 255

                                                                 
Query: 241 ctataatgcttctgtatgcttattctgcagccctgcatatgagcaaatgtgggg 294
           |||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 254 ctataatgcttctgtatgcttattctgcagccctgcatatgaacaaatgcgggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |