BAC Information

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BAC

Clone NameMSMg01-095H11
Chromosome7 (Build37)
Map Location 118,367,343 - 118,367,632
singlet/doubletsinglet
Overlap geneLOC100042658
Upstream geneSwap70, EG668368, Sbf2, LOC668246, Adm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9, Eif4g2, LOC100043221
Downstream geneLOC384658, Galntl4, LOC668399, LOC100042678, Usp47, Dkk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095H11.T7 (MSMg01no095_h11.b1)MSMg01-095H11.TJ (MSMg01no095_h11.g1)
ACCAG312372AG312373
length754696
length of high quality
(start - end)
---290 (55 - 344)
definitionCHROMAT_FILE: MSMg01no095_h11.b1 PHD_FILE: MSMg01no095_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:29 2005CHROMAT_FILE: MSMg01no095_h11.g1 PHD_FILE: MSMg01no095_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTAATACACTCCTATATCGAGAGGTCCGCGGAATTCTGTCTCTG
CCCATTTCCTGACTTGTTTGAGAATCTGGACAGCCTCTTTATTATGTCTG
TACATTTTGCAATATATAACCTTGCCTCAGAAATGTGCTGTGGGAATAAA
TGTGTCGCTGTTGTAAATCTTGCTTAAATTTCTCTAGATGAGAGGCATAT
CACGTGTTGATATGTGCTAGCGGTAAGGCCGACTGACAACTGATAACGCG
TCAATACTACATGCGCTTATCAGAAGACCGCAAGAGCTGCTTCTGAGAGC
TTCTGCATGCAACACTGTGTCGTGGTCTGTAAAGACAGCGATCACGCTCC
ACTCTCTACGATCCATATCCTGCAAACATCTCTACTAAAGATTAGGTCCG
ACCTCTGCATGCTTTTATATCTAGACGCACAAAATCATGTTTATCTCTTC
CCTCCTCGACTTCGAGTAAATTCTTATCTTCACTACATCGCCTGACATAA
ATCGTTTTAAATATGCCTCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGACTAGTTTTTGATAGGATATCGAATTACCA
ATATCCGCAACGTTTCCGCTAGCTTATCGCATGAAAGTCAAATTATACCA
TCCGGGCCGACTATCATATCTTTGGAAAGTACCTTCTCTACCTTTGTAAT
ACTAAGGCCCCTACTTACCTCTGTATTTCTAAGCCCACCCGTCTACCATA
AAAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAGATACGACAACTACAGGGTGAAACAAGTAAAAGCAATGCCTCATC
CCGATGTGAGAAAGCCAAGGAGTTGCAGGGATTCATTCAATTTCCAGTGC
TGTAAGTCGTCAGACTCACGATGTTTTACAACATTGCTCAGGCCAAACAA
AACACGCTGGGCCATGACTCTCACTCCGCACACTCTGCACACTCTGGTGT
GAATGTGATGACCAGAAGGGGTTAGGGTTTTATAAAGGAAAGAGTGCCTG
CTTGCAGGAAGATCAAGAGCCAGGCAAACCTGGGTTTTGCAAGATGACTC
ACCACCCAACGGTGCTTGCCACCAAGACTAACAACCTGAACTCAAGTCTC
AGAACCTACATGGTGGAAGAAGAGAACCGACTCCAGCAGGTTGCACTCTG
ACCTCCATGTCATGCTGCAGTGTGCACACACCCATTCACATACATGTGCA
TGCACGCATAAGTGAGTAAATGTAATTCAAACTTTTAAAGGACCAGACAG
ACCAAGCTATGATCATTTGAACTCCAGATAGTGTCTGGTGTGACCAGTTT
TGACAGTTGATTGTTACCAGTAGTTTTATCAAATAGCCAAAGTCTCTTTT
TATCACTCTTTTCTTCTTATGTGTTTCTTATAAATTCTTATCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_h11.g1 MSMg01no095_h11.g1 CHROMAT_FILE:
MSMg01no095_h11.g1 PHD_FILE: MSMg01no095_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:30 2005
         (290 letters)



>mm_chr7_118367143_118367832
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatacgacaactacagggtgaaacaagtaaaagcaatgcctcatcccgatgtgagaaag 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agatacgacaactacggggtgaaacaagtaaaagcaatgcctcatcccgatgtgagaaag 431

                                                                       
Query: 61  ccaaggagttgcagggattcattcaatttccagtgctgtaagtcgtcagactcacgatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ccaaggagttgcagggattcattcaatttccagtgctgtaagtcgtcagactcacgatgt 371

                                                                       
Query: 121 tttacaacattgctcaggccaaacaaaacacgctgggccatgactctcactccgcacact 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 370 tttacaacattgctcaggccaaacaaaacacgccgggccatgactctcactccgcacact 311

                                                                       
Query: 181 ctgcacactctggtgtgaatgtgatgaccagaaggggttagggttttataaaggaaagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ctgcacactctggtgtgaatgtgatgaccagaaggggttagggttttataaaggaaagag 251

                                                             
Query: 241 tgcctgcttgcaggaagatcaagagccaggcaaacctgggttttgcaaga 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tgcctgcttgcaggaagatcaagagccaggcaaacctgggttttgcaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)