BAC Information

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BAC

Clone NameMSMg01-096O23
Chromosome7 (Build37)
Map Location 70,498,895 - 70,499,145
singlet/doubletsinglet
Overlap genenone
Upstream geneMagel2, Mkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251, Chrna7
Downstream geneOtud7a, LOC545971, LOC100041386, LOC665083, Klf13, E030018B13Rik, Trpm1, BB128963, Mtmr15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096O23.T7 (MSMg01no096_o23.b1)MSMg01-096O23.TJ (MSMg01no096_o23.g1)
ACCAG313493AG313494
length778800
length of high quality
(start - end)
290 (131 - 420)252 (132 - 383)
definitionCHROMAT_FILE: MSMg01no096_o23.b1 PHD_FILE: MSMg01no096_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:29 2005CHROMAT_FILE: MSMg01no096_o23.g1 PHD_FILE: MSMg01no096_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCTTGTTGTTTTTTTTGTGTCATTCGCTTCCAACCCACCCCCCTAATA
CCNTACATCTATAATTGCGGCCGCTAAACGACTACTACATTTCGAAACGC
GCGGAATTCTTCCCAGATTCCCGACACTCTTAAGATGACATGGAATATTC
AGCGAGGTAAAGAGCTTTTTAACTGCAACACACTGTAGCACCCTGCGACA
CAATTAAAAGAACAGCAATTCCTCAGTCCGTGCTCAAAATCTGCAGTGGA
ATTAAACTAGAAAGCAGTAACAGAAAGATACCTAACGACACCCCTTACCA
GACACATAGAGACTTAAAGACCATAGTTCTATAAACCTGTGTGAAAAACA
AATGTCAAAAAACTATATTTTAACTATTTTTTTTTAAATGTAACTTTTCA
AAACTCCTAAGACAGGACTGAGCCTGCCCCTGCCAGGAAATGTATAGCAC
TGAAGAGCATTTTAAAGGAAGAGACACCAAAAATTAATAATGTTTCTACT
TTATGGGGAAGAACAAATTAATAAATCCAAATAATAATTATAAGAGAAAT
AAATTAATTTGAAAACAGGAAATCAATAGACAAAATTAGCATTACAAACT
GGTATTTTGAATACATCAATGAAATTGACAAGCCACTAGCTAGAGTATAA
AAAGAAAGAGACCTAGTCGGCCATCATTGGTCAGGAGAGGCCCCTTGCCC
TTGCGAAGATTATCTGCCCCTGTATATGTGAATGCCATGTCCCAGAATTT
GCAAATGGATGCTCTGCGCAACACCTCA
CCCCCTTTTNTNNNNCTTTCCCTCTTCTCTTTCCCTCTTCTTCCCCCATA
CATTCCCCCGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGTGCTTGTGAGAAGAT
GCCAAGAAAAGAGTCTTGAGACCTCAGTTTCTTCAAAATATGGGATTGTT
TTGTAATGTTTTTTCATACTCTTCCCAGGTGTAGTGGATAATGGTGAGTT
ACTACAGCTGTTTGTTATTCAAATGTCTCTATGGAAAAATGTTTTCCTCA
CATATAGCTTATCCTTGCGATTGCATACAATTTGAACTCATGAAAACATT
TTTCAGGTGTGATAGTTTGAATATGCTTGGTCTAGGGAGTGGCACTATCA
GGAGGTGTGGTTTTCTTGGAGTCGGCATGGCCTTGGAAGAACTGTGTCAC
TGTGGTGGAGGACTTTAAGACCCTCCTCCTAGCTGTCTGGAAGCCAGTCT
TTCCTGGTTGCCTTTGGATCAAGATGCATAACTCTTCACAGCTATATCTG
CCTGGATGCTGCCATGCTTCAGGCCATGATGATAATGGACTGACCCTCTA
AAGTGTACGCTAGCTCCAATTAAATATTGTCCTTTATAAAAAGTTGTTTT
GGTCACAGCGTCTCTTTACAATAATGCAAATCCTAAAATTCAGGCAACCT
TTTTTTTCTTTTATCTCCCCCAAAAAATCAACCACCGATGCTTCTGATAC
CAATTGAATATTGAATGGTACTTTAAGATCCCTTTCCTCTTTAACCCTCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_o23.g1 MSMg01no096_o23.g1 CHROMAT_FILE:
MSMg01no096_o23.g1 PHD_FILE: MSMg01no096_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:29 2005
         (252 letters)



>mm_chr7_70498695_70499346
          Length = 652

 Score =  431 bits (223), Expect = e-125
 Identities = 244/251 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagtgcttgtgagaagatgccaagaaaagagtcttgagacctcagtttcttcaaaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 451 caagtgcttgtgagaagatgccaagaaaagagtcttgagacctcagtttcttcaaaacat 392

                                                                       
Query: 61  gggattgttttgtaatgttttttcatactcttcccaggtgtagtggataatggtgagtta 120
           || ||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||
Sbjct: 391 ggaattgttttgtaatgttttttcatactcctcccaggtgtagtggataggggtgagtta 332

                                                                       
Query: 121 ctacagctgtttgttattcaaatgtctctatggaaaaatgttttcctcacatatagctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctacagctgtttgttattcaaatgtctctatggaaaaatgttttcctcacatatagctta 272

                                                                       
Query: 181 tccttgcgattgcatacaatttgaactcatgaaaacatttttcaggtgtgatagtttgaa 240
           ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tccttgcaattgcatacagtttgaactcatgaaaacatttttcaggtgtgatagtttgaa 212

                      
Query: 241 tatgcttggtc 251
           |||||||||||
Sbjct: 211 tatgcttggtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)