BAC Information

Click to search

BAC

Clone NameMSMg01-096P13
Chromosome7 (Build37)
Map Location 98,501,607 - 98,501,917
singlet/doubletsinglet
Overlap geneDlg2
Upstream geneSytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik, LOC666689, LOC621816, LOC100039943
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096P13.T7 (MSMg01no096_p13.b1)MSMg01-096P13.TJ (MSMg01no096_p13.g1)
ACCAG313521AG313522
length826755
length of high quality
(start - end)
314 (52 - 365)---
definitionCHROMAT_FILE: MSMg01no096_p13.b1 PHD_FILE: MSMg01no096_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:32 2005CHROMAT_FILE: MSMg01no096_p13.g1 PHD_FILE: MSMg01no096_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCAATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATTAAAAGATCCCCATTCCTAAACGGGCCAGCATGGAAA
GAGCACTCTCAATGTGTAATCAACCTGGTTCCCAAATAAATCCTGGGTCC
TTAGAAGTTTACAATGCACCCACCATTAAGCATGTTACCGGATATCTATG
CAATGATGAAATGGAAATCGATGTAACTGTGACCAGGTCTTTAATGGAGT
GGAATTAAGCTTACTATGTGGTAGATTTCATTTTCATTAACTGTCACCTT
ATAATGTCTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGATAGGGAGG
AGAGGAGAGAGAGACTTTTTTTTTTTTCTCCCCTCCCCCCCTCGCCCCCC
CCCCTTTTTTCTTCTTTCCCCCCCCCCCCCTTTACTCTACATCAACCCTC
CCTCCCCCGTCTCCCCTCCCCTCCCCCGCACATACCTCCTTTCTCCCCCC
CCTCTCTTCCCCCTTTTCCTTCCCTCCTCCTTTCTCCCCCCCTATCCTCT
CTAACACTCTCCCTACATACCCTCCCATCCACCCTCCCTTTTTCTCCGTT
CCCTCTACGCCCCCTAATACATCCGCCCTCCCCCCCTCGCTGTTTCTCCC
CCCGCTGCTTTTTATCCCTTCCTTTCCCCCCTCTTCCCTTTCTGCCCCCC
CCCCCCTTCGTCTCCCCCCCTTCTTCACCCCCTTTTTCCCCCCATCTCGT
TCCCTTTCTCCCCTTTCTCCGTCTTTCCTTCACCCCACCTCACTTTTCCC
TTTCCCTTACCTCTCCCGTCTCCCCC
CCTCCTATGAAGTGCTAGGCCTGGTGTATGCCTGGTTTTCAAXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCTCTGTGCCTGCTTTCTCAGCT
GTGAAATGAACAGGCATAGCTAAATAACACACACGCCGCCTTATTAACTG
TATGATCCTTGTAATTCAATAATCGAGCAATTAATAACTCCAGTATTTTC
TCGCAAAGCCTTCTTATCAATCTAAAGAGTACATACCTAATTCATCAGAA
TAACTTCAGGGGATCACAGCGTCCCAGCACCTATCTAAGCAACGTGCACT
GCTGCCTGCAAATGAAGAGGGAAATGCTAACTTAAAATAGTTTTCCAGAA
CATACACAATAACGATAATGAACATTTAAACCATCAACCAATTCATCCCT
ACTCTTAATGTTATCTTTTCTACACGCTTTCTTTTTTTAATCATACGTAT
GCTTGCCGTAGTTACAGCCGATTACCCGTACACGGCTCCCACTACTACAT
TCCTCCACATCCTTCCCGCACCTTGTAGTTACCGGCCTCCTCCCGCCACC
CATCCTGTGCACTGATGCATCCCCTTTGGAAACCACCACATGCCCTTTAC
CCACCGTACTAACCCTCCTACCGCTAAACCCAAAGCCTTCCCCCATACTC
TCACCCGCGCCTTCCCCTTTTTCCCGCGTTTCTATACTATCTCGCCACCC
CCTTTTTTGGTAACTATTCACATTTTGTCTATCCCTTCTTGTACCATTCT
TCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_p13.b1 MSMg01no096_p13.b1 CHROMAT_FILE:
MSMg01no096_p13.b1 PHD_FILE: MSMg01no096_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:32 2005
         (314 letters)



>mm_chr7_98501403_98502116
          Length = 714

 Score =  540 bits (279), Expect = e-158
 Identities = 303/311 (97%), Gaps = 2/311 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattaaaagatccccattcctaaacgggccagcatggaaagagcactctcaatgt 64
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactaaaagatccccattcctaaacgggccagcatggaaagagcactctcaatgt 264

                                                                       
Query: 65  gtaatcaacctggttcccaaataaatcctgggtccttagaagtttacaatgcacccacca 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtaatcaacctggctcccaaataaatcctgggtccttagaagtttacaatgcacccacca 324

                                                                       
Query: 125 ttaagcatgttaccggatatctatgcaatgatgaaatggaaatcgatgtaactgtgacca 184
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 325 ttaagcatgttaccggatatctatgcaatggtgaaatggaaatcgatgtaactgtgacca 384

                                                                       
Query: 185 ggtctttaatggagtggaattaagcttactatgtggtagatttcattttcattaactgtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtctttaatggagtggaattaagcttactatgtggtagatttcattttcattaactgtc 444

                                                                       
Query: 245 accttataatgtcttgagagagagagagagagagagagagagagggatagggag-gagag 303
           |||||||||||||||||||||||||||||||||||||||||||| || || ||| |||||
Sbjct: 445 accttataatgtcttgagagagagagagagagagagagagagagagagagagagagagag 504

                      
Query: 304 -gagagagaga 313
            ||||||||||
Sbjct: 505 agagagagaga 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 98
Number of extensions: 46
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)