BAC Information

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BAC

Clone NameMSMg01-097B15
Chromosome7 (Build37)
Map Location 64,934,140 - 64,934,730
singlet/doubletsinglet
Overlap geneGabrb3
Upstream geneLOC100040839, Gabrg3, Gabra5
Downstream geneEG668807, LOC434189, Atp10a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097B15.T7 (MSMg01no097_b15.b1)MSMg01-097B15.TJ (MSMg01no097_b15.g1)
ACCAG313619AG313620
length704704
length of high quality
(start - end)
594 (44 - 637)427 (71 - 497)
definitionCHROMAT_FILE: MSMg01no097_b15.b1 PHD_FILE: MSMg01no097_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:43 2005CHROMAT_FILE: MSMg01no097_b15.g1 PHD_FILE: MSMg01no097_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCGCTTGATTTCCAGCCAGCTTGAAGGGACTCATGACTTCATAAGACAT
TTGGTAAGTCTTCACTGAATTCCAAACCCCACCTACACATATGTAAAATC
TCATTCAAAAGGTGGCACAGGTATGTTTTATTTGCAATACCTTCAACACA
AATTATGAAATCAAGCCTGAAGGAGAAAGCTCTGTGTGAGTGCTGATGGG
AGATCCTCTGAGCACGAGATACAAAGTATGTGGTAAGGAGAAGAGTAAGG
AGTCGGGTACTGTGATGGTACAAAGGAGGAAGACAGATACAGTAACCCCA
GCATGATAGAAGACTGTGTACCTGGACAGACTTATGTTCCCACACTCATC
CCTTAGTGTAATACAGTGAAATTCCCTTAATCCTTGGAGTCCAGTCATGG
CCCTCCTACATTAGGTCCACAGTAGTGCACGGGGCTTGCAGCTACAGGAT
AGTTTTGTAGCCATTGGCTTTGTTTCTCTCCTGTACATGTGGTTTGTCCA
ACACAGCACTCTACTGGATCTGACAAGTATTAATAAAAGAGCTTCCACTC
CCAGGGGGAATACAATATTCCAGGCCAAACTGGATCAAACGTACTTCTTC
TCAAGTAGTGTTGCTGGCTCACATCAGCTTCCTCATGGGACCAGGGGAAC
ATCC
ATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGAGACTCCCAGGACACAATGGAGATGAC
AATATCTGGAATACCCAACAGTAGAGAGATAGAACCTGAAGAAACCAGCT
CCAGTAGACAGACATGATTCCCATTTGAGGGATGGGGCCACCCACTTATC
ACAAAATTTTTAACTCAGAATTGTTACTGCCTAAAGGACACACAGGGACA
AAAAGTGGAGCACAGACTGAGAAAAAGGTCATCCAGAGACTTCCCCACAT
TGGGATCCATCCCATCTACAGACACCCAACCCTGACACCACTGCTGATGC
CAAGAAGTGCTTGCAGACTGGAGTCTAGTATAGCTGTTCTCTGAGAGGCT
GCCAGGACCTGACTAAGACAGATATAGATACTCACAGCCAACATTGGACT
CAGCCAGGAGAGCCCAATGGAACAGTTATGGGAATGACTGAAGGAGCTAA
AGGGGATTGCAACTGCATAGGAAGAACAACAATATCAACTAACAGGACCC
ATCAGAGCTTCCAGGAATTAAACTACCACCAAAGTATATACCTGAAAGGG
TCCATGGTGCCTACCTATGTAGCAGAGGACTGCCTTATCTGGCATCCATG
GGATGAGAGGGGCTTGTTCCTGCGGAAGCTTGTTGCCCCAGAGAAGGCAA
TGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_b15.b1 MSMg01no097_b15.b1 CHROMAT_FILE:
MSMg01no097_b15.b1 PHD_FILE: MSMg01no097_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:43 2005
         (594 letters)



>mm_chr7_64933936_64934930
          Length = 995

 Score =  998 bits (516), Expect = 0.0
 Identities = 573/594 (96%), Gaps = 7/594 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcgcttgatttc---cagccagcttgaagggactcatgacttcataagacatttgg 61
           |||||||||||| |     |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcgcttgagt--aagcagccagcttgaagggactcatgacttcataagacatttgg 262

                                                                       
Query: 62  taagtcttcactgaattccaaaccccacctacacatatgtaaaatctcattcaaaaggtg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 taagtcttcactgaattccaaaccccacctacacatatgtaaaatctcattcaaaaggtg 322

                                                                       
Query: 122 gcacaggtatgttttatttgcaataccttcaacacaaattatgaaatcaagcctgaagga 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcacaggtatgttttatttgcaataccttcaacacaaattatgaaatcaagcctgaagga 382

                                                                       
Query: 182 gaaagctctgtgtgagtgctgatgggagatcctctgagcacgagatacaaagtatgtggt 241
           |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 383 gaaagctctgtgtgagtgctgatgggagatcctctgagcatgggatacaaagtatgtggt 442

                                                                       
Query: 242 aaggagaagagtaaggagtcgggtactgtgatggtacaaaggaggaag-acagatacagt 300
           |||||||||||||||||||||||||||||||||| ||||||||| ||| ||| |||||||
Sbjct: 443 aaggagaagagtaaggagtcgggtactgtgatgggacaaaggag-aaggacatatacagt 501

                                                                       
Query: 301 aaccccagcatgatagaagactgtgtacctggacagacttatgttcccacactcatccct 360
           ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 502 aaccccagcatgatagaagactgtgtacctggacagaattatgtccccacactcatccct 561

                                                                       
Query: 361 tagtgtaatacagtgaaattcccttaatccttggagtccagtcatggccctcctacatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 562 tagtgtaatacagtgaaattcccttaatccttggagtccagtcatggtcctcttacatta 621

                                                                       
Query: 421 ggtccacagtagtgcacggggcttgcagctacaggatagttttgtagccattggctttgt 480
           ||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 622 ggtacacagtagtgcacggggcttgcagctataggatagttttttagccattggctttgt 681

                                                                       
Query: 481 ttctctcctgtacatgtggtttgtccaacacagcactctactggatctgacaagtattaa 540
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttctctcctgtagatgtggtttgtccaacacagcactctactggatctgacaagtattaa 741

                                                                 
Query: 541 taaaagagcttccactcccagggggaatacaatattccaggccaaactggatca 594
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 742 taaaagagcttccactcctagggggaatacaatattccaggccaaactggatca 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 995
Length adjustment: 10
Effective length of query: 584
Effective length of database: 985
Effective search space:   575240
Effective search space used:   575240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)